"If He Has it, We Know What to Do": Parent Perspectives on Familial Risk for Autism Spectrum Disorder. |
MacDuffie, Katherine E; Turner-Brown, Lauren; Estes, Annette M; Wilfond, Benjamin S; Dager, Stephen R; Pandey, Juhi; Zwaigenbaum, Lonnie; Botteron, Kelly N; Pruett, John R; Piven, Joseph; Peay, Holly L; , ; |
RFA-MH-18-510 |
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"Reverse Genomics" Predicts Function of Human Conserved Noncoding Elements. |
Marcovitz, Amir; Jia, Robin; Bejerano, Gill; |
RFA-MH-14-215 |
2016 |
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124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics. |
Wade, Orsolya K; Woehrstein, Johannes B; Nickels, Philipp C; Strauss, Sebastian; Stehr, Florian; Stein, Johannes; Schueder, Florian; Strauss, Maximilian T; Ganji, Mahipal; Schnitzbauer, Joerg; Grabmayr, Heinrich; Yin, Peng; Schwille, Petra; Jungmann, Ralf; |
RFA-MH-14-216 |
2019 |
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3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds. |
Oran, Daniel; Rodriques, Samuel G; Gao, Ruixuan; Asano, Shoh; Skylar-Scott, Mark A; Chen, Fei; Tillberg, Paul W; Marblestone, Adam H; Boyden, Edward S; |
RFA-MH-14-216 |
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3D X-Ray Imaging of Continuous Objects beyond the Depth of Focus Limit. |
Gilles, M A; Nashed, Y S G; DU, M; Jacobsen, C; Wild, S M; |
RFA-MH-15-225 |
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7 Tesla MRI of the ex vivo human brain at 100 micron resolution. |
Edlow, Brian L; Mareyam, Azma; Horn, Andreas; Polimeni, Jonathan R; Witzel, Thomas; Tisdall, M Dylan; Augustinack, Jean C; Stockmann, Jason P; Diamond, Bram R; Stevens, Allison; Tirrell, Lee S; Folkerth, Rebecca D; Wald, Lawrence L; Fischl, Bruce; van der Kouwe, Andre; |
RFA-MH-17-210 |
2019 |
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Circuit Diagrams
Human Neuroscience
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A circuit mechanism for differentiating positive and negative associations. |
Namburi, Praneeth; Beyeler, Anna; Yorozu, Suzuko; Calhoon, Gwendolyn G; Halbert, Sarah A; Wichmann, Romy; Holden, Stephanie S; Mertens, Kim L; Anahtar, Melodi; Felix-Ortiz, Ada C; Wickersham, Ian R; Gray, Jesse M; Tye, Kay M; |
RFA-MH-14-216 |
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A Comparative Study of the Pharmacokinetics of Clozapine -Oxide and Clozapine -Oxide Hydrochloride Salt in Rhesus Macaques. |
Allen, Daicia C; Carlson, Timothy L; Xiong, Yan; Jin, Jian; Grant, Kathleen A; Cuzon Carlson, Verginia C; |
RFA-MH-14-216 |
2018 |
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A Comprehensive Analysis of Cell Type-Specific Nuclear RNA From Neurons and Glia of the Brain. |
Reddy, Adarsh S; O'Brien, David; Pisat, Nilambari; Weichselbaum, Claire T; Sakers, Kristina; Lisci, Miriam; Dalal, Jasbir S; Dougherty, Joseph D; |
RFA-MH-15-225 |
2016 |
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A family of transposable elements co-opted into developmental enhancers in the mouse neocortex. |
Notwell, James H; Chung, Tisha; Heavner, Whitney; Bejerano, Gill; |
RFA-MH-14-215 |
2015 |
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A general and flexible method for signal extraction from single-cell RNA-seq data. |
Risso, Davide; Perraudeau, Fanny; Gribkova, Svetlana; Dudoit, Sandrine; Vert, Jean-Philippe; |
RFA-MH-14-215 |
2018 |
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A Genetically Encoded Biosensor Strategy for Quantifying Non-muscle Myosin II Phosphorylation Dynamics in Living Cells and Organisms. |
Markwardt, Michele L; Snell, Nicole E; Guo, Min; Wu, Yicong; Christensen, Ryan; Liu, Huafeng; Shroff, Hari; Rizzo, M A; |
RFA-MH-16-775 |
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Interventional Tools
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A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types. |
Shima, Yasuyuki; Sugino, Ken; Hempel, Chris Martin; Shima, Masami; Taneja, Praveen; Bullis, James B; Mehta, Sonam; Lois, Carlos; Nelson, Sacha B; |
RFA-MH-14-215 |
2016 |
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A midline thalamic circuit determines reactions to visual threat. |
Salay, Lindsey D; Ishiko, Nao; Huberman, Andrew D; |
RFA-NS-14-009 |
2018 |
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A New DREADD Facilitates the Multiplexed Chemogenetic Interrogation of Behavior. |
Vardy, Eyal; Robinson, J Elliott; Li, Chia; Olsen, Reid H J; DiBerto, Jeffrey F; Giguere, Patrick M; Sassano, Flori M; Huang, Xi-Ping; Zhu, Hu; Urban, Daniel J; White, Kate L; Rittiner, Joseph E; Crowley, Nicole A; Pleil, Kristen E; Mazzone, Christopher M; Mosier, Philip D; Song, Juan; Kash, Thomas L; Malanga, C J; Krashes, Michael J; Roth, Bryan L; |
RFA-MH-14-216 |
2015 |
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A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish. |
Oteiza, Pablo; Odstrcil, Iris; Lauder, George; Portugues, Ruben; Engert, Florian; |
RFA-NS-14-009 |
2017 |
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A Novel Olfactometer for Efficient and Flexible Odorant Delivery. |
Burton, Shawn D; Wipfel, Mia; Guo, Michael; Eiting, Thomas P; Wachowiak, Matt; |
RFA-MH-17-250 |
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A repeated molecular architecture across thalamic pathways. |
Phillips, James W; Schulmann, Anton; Hara, Erina; Winnubst, Johan; Liu, Chenghao; Valakh, Vera; Wang, Lihua; Shields, Brenda C; Korff, Wyatt; Chandrashekar, Jayaram; Lemire, Andrew L; Mensh, Brett; Dudman, Joshua T; Nelson, Sacha B; Hantman, Adam W; |
RFA-MH-14-215 |
2019 |
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A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers. |
Martin-Gayo, Enrique; Cole, Michael B; Kolb, Kellie E; Ouyang, Zhengyu; Cronin, Jacqueline; Kazer, Samuel W; Ordovas-Montanes, Jose; Lichterfeld, Mathias; Walker, Bruce D; Yosef, Nir; Shalek, Alex K; Yu, Xu G; |
RFA-MH-14-215 |
2018 |
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A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation. |
Polioudakis, Damon; de la Torre-Ubieta, Luis; Langerman, Justin; Elkins, Andrew G; Shi, Xu; Stein, Jason L; Vuong, Celine K; Nichterwitz, Susanne; Gevorgian, Melinda; Opland, Carli K; Lu, Daning; Connell, William; Ruzzo, Elizabeth K; Lowe, Jennifer K; Hadzic, Tarik; Hinz, Flora I; Sabri, Shan; Lowry, William E; Gerstein, Mark B; Plath, Kathrin; Geschwind, Daniel H; |
RFA-MH-14-215 |
2019 |
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A Teensy microcontroller-based interface for optical imaging camera control during behavioral experiments. |
Romano, Michael; Bucklin, Mark; Gritton, Howard; Mehrotra, Dev; Kessel, Robb; Han, Xue; |
RFA-NS-18-018 |
2018 |
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A toolbox of IgG subclass-switched recombinant monoclonal antibodies for enhanced multiplex immunolabeling of brain. |
Andrews, Nicolas P; Boeckman, Justin X; Manning, Colleen F; Nguyen, Joe T; Bechtold, Hannah; Dumitras, Camelia; Gong, Belvin; Nguyen, Kimberly; van der List, Deborah; Murray, Karl D; Engebrecht, JoAnne; Trimmer, James S; |
RFA-NS-18-005 |
2019 |
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A toolbox of nanobodies developed and validated for use as intrabodies and nanoscale immunolabels in mammalian brain neurons. |
Dong, Jie-Xian; Lee, Yongam; Kirmiz, Michael; Palacio, Stephanie; Dumitras, Camelia; Moreno, Claudia M; Sando, Richard; Santana, L Fernando; Südhof, Thomas C; Gong, Belvin; Murray, Karl D; Trimmer, James S; |
RFA-NS-18-005
RFA-NS-16-006 |
2019 |
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Active control of arousal by a locus coeruleus GABAergic circuit. |
Breton-Provencher, Vincent; Sur, Mriganka; |
RFA-NS-14-009 |
2019 |
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Activity of Prefrontal Neurons Predict Future Choices during Gambling. |
Passecker, Johannes; Mikus, Nace; Malagon-Vina, Hugo; Anner, Philip; Dimidschstein, Jordane; Fishell, Gordon; Dorffner, Georg; Klausberger, Thomas; |
RFA-MH-16-775 |
2017 |
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Acute engagement of G-mediated signaling in the bed nucleus of the stria terminalis induces anxiety-like behavior. |
Mazzone, C M; Pati, D; Michaelides, M; DiBerto, J; Fox, J H; Tipton, G; Anderson, C; Duffy, K; McKlveen, J M; Hardaway, J A; Magness, S T; Falls, W A; Hammack, S E; McElligott, Z A; Hurd, Y L; Kash, T L; |
RFA-MH-14-216 |
2016 |
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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. |
Tasic, Bosiljka; Menon, Vilas; Nguyen, Thuc Nghi; Kim, Tae Kyung; Jarsky, Tim; Yao, Zizhen; Levi, Boaz; Gray, Lucas T; Sorensen, Staci A; Dolbeare, Tim; Bertagnolli, Darren; Goldy, Jeff; Shapovalova, Nadiya; Parry, Sheana; Lee, Changkyu; Smith, Kimberly; Bernard, Amy; Madisen, Linda; Sunkin, Susan M; Hawrylycz, Michael; Koch, Christof; Zeng, Hongkui; |
RFA-MH-14-215 |
2016 |
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Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales. |
Hogstrom, L J; Guo, S M; Murugadoss, K; Bathe, M; |
RFA-MH-14-216 |
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Alienation, Quality of Life, and DBS for Depression. |
Zuk, Peter; McGuire, Amy L; Lázaro-Muñoz, Gabriel; |
RFA-MH-17-260 |
2018 |
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All-optical bidirectional neural interfacing using hybrid multiphoton holographic optogenetic stimulation. |
Paluch-Siegler, Shir; Mayblum, Tom; Dana, Hod; Brosh, Inbar; Gefen, Inna; Shoham, Shy; |
RFA-NS-14-009 |
2015 |
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An Accumulation-of-Evidence Task Using Visual Pulses for Mice Navigating in Virtual Reality. |
Pinto, Lucas; Koay, Sue A; Engelhard, Ben; Yoon, Alice M; Deverett, Ben; Thiberge, Stephan Y; Witten, Ilana B; Tank, David W; Brody, Carlos D; |
RFA-NS-14-009 |
2018 |
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An acetylcholine-activated microcircuit drives temporal dynamics of cortical activity. |
Chen, Naiyan; Sugihara, Hiroki; Sur, Mriganka; |
RFA-NS-14-009 |
2015 |
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An active texture-based digital atlas enables automated mapping of structures and markers across brains. |
Chen, Yuncong; McElvain, Lauren E; Tolpygo, Alexander S; Ferrante, Daniel; Friedman, Beth; Mitra, Partha P; Karten, Harvey J; Freund, Yoav; Kleinfeld, David; |
RFA-NS-17-018
RFA-NS-14-009
RFA-MH-14-215
RFA-MH-17-225 |
2019 |
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An Array of Descending Visual Interneurons Encoding Self-Motion in Drosophila. |
Suver, Marie P; Huda, Ainul; Iwasaki, Nicole; Safarik, Steve; Dickinson, Michael H; |
RFA-NS-14-009 |
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An inhibitory gate for state transition in cortex. |
Zucca, Stefano; D'Urso, Giulia; Pasquale, Valentina; Vecchia, Dania; Pica, Giuseppe; Bovetti, Serena; Moretti, Claudio; Varani, Stefano; Molano-Mazón, Manuel; Chiappalone, Michela; Panzeri, Stefano; Fellin, Tommaso; |
RFA-NS-14-009 |
2017 |
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An open repository for single-cell reconstructions of the brain forest. |
Akram, Masood A; Nanda, Sumit; Maraver, Patricia; Armañanzas, Rubén; Ascoli, Giorgio A; |
RFA-MH-17-230 |
2018 |
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An orange calcium-modulated bioluminescent indicator for non-invasive activity imaging. |
Oh, Younghee; Park, Yunhee; Cho, Julia H; Wu, Haodi; Paulk, Nicole K; Liu, Lan Xiang; Kim, Namdoo; Kay, Mark A; Wu, Joseph C; Lin, Michael Z; |
RFA-NS-14-008
RFA-MH-17-220 |
2018 |
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Analysis of Neuronal Spike Trains, Deconstructed. |
Aljadeff, Johnatan; Lansdell, Benjamin J; Fairhall, Adrienne L; Kleinfeld, David; |
RFA-NS-14-009 |
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Anatomical Reconstruction and Functional Imaging Reveal an Ordered Array of Skylight Polarization Detectors in Drosophila. |
Weir, Peter T; Henze, Miriam J; Bleul, Christiane; Baumann-Klausener, Franziska; Labhart, Thomas; Dickinson, Michael H; |
RFA-NS-14-009 |
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Architecture, Function, and Assembly of the Mouse Visual System. |
Seabrook, Tania A; Burbridge, Timothy J; Crair, Michael C; Huberman, Andrew D; |
RFA-NS-14-009 |
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Area-Specificity and Plasticity of History-Dependent Value Coding During Learning. |
Hattori, Ryoma; Danskin, Bethanny; Babic, Zeljana; Mlynaryk, Nicole; Komiyama, Takaki; |
RFA-NS-15-005 |
2019 |
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Assembly and maintenance of GABAergic and Glycinergic circuits in the mammalian nervous system. |
Gamlin, Clare R; Yu, Wan-Qing; Wong, Rachel O L; Hoon, Mrinalini; |
RFA-NS-14-009 |
2018 |
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Assessing spatiotemporal variability of brain spontaneous activity by multiscale entropy and functional connectivity. |
Liu, Mianxin; Song, Chenchen; Liang, Yuqi; Knöpfel, Thomas; Zhou, Changsong; |
RFA-MH-15-225 |
2019 |
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Astrocyte-Neuron Interactions in the Striatum: Insights on Identity, Form, and Function. |
Khakh, Baljit S; |
NS-15-004 |
2019 |
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Auditory cortex shapes sound responses in the inferior colliculus. |
Blackwell, Jennifer M; Lesicko, Alexandria Mh; Rao, Winnie; De Biasi, Mariella; Geffen, Maria N; |
RFA-NS-18-030
RFA-MH-18-510 |
2020 |
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Automated Behavioral Experiments in Mice Reveal Periodic Cycles of Task Engagement within Circadian Rhythms. |
Francis, Nikolas A; Bohlke, Kayla; Kanold, Patrick O; |
RFA-NS-14-009
RFA-NS-17-018 |
2019 |
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Balancing the Robustness and Efficiency of Odor Representations during Learning. |
Chu, Monica W; Li, Wankun L; Komiyama, Takaki; |
RFA-NS-15-005 |
2016 |
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Bayesian model selection applied to the analysis of fluorescence correlation spectroscopy data of fluorescent proteins in vitro and in vivo. |
Sun, Guangyu; Guo, Syuan-Ming; Teh, Cathleen; Korzh, Vladimir; Bathe, Mark; Wohland, Thorsten; |
RFA-MH-14-216 |
2015 |
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Behavioral and Physiological Effects of a Novel Kappa-Opioid Receptor-Based DREADD in Rats. |
Marchant, Nathan J; Whitaker, Leslie R; Bossert, Jennifer M; Harvey, Brandon K; Hope, Bruce T; Kaganovsky, Konstantin; Adhikary, Sweta; Prisinzano, Thomas E; Vardy, Eyal; Roth, Bryan L; Shaham, Yavin; |
RFA-MH-14-216 |
2015 |
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Bidirectional electromagnetic control of the hypothalamus regulates feeding and metabolism. |
Stanley, Sarah A; Kelly, Leah; Latcha, Kaamashri N; Schmidt, Sarah F; Yu, Xiaofei; Nectow, Alexander R; Sauer, Jeremy; Dyke, Jonathan P; Dordick, Jonathan S; Friedman, Jeffrey M; |
RFA-MH-14-216 |
2016 |
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BRAIN Initiative: Cutting-Edge Tools and Resources for the Community. |
Litvina, Elizabeth; Adams, Amy; Barth, Alison; Bruchez, Marcel; Carson, James; Chung, Jason E; Dupre, Kristin B; Frank, Loren M; Gates, Kathleen M; Harris, Kristen M; Joo, Hannah; William Lichtman, Jeff; Ramos, Khara M; Sejnowski, Terrence; Trimmer, James S; White, Samantha; Koroshetz, Walter; |
RFA-NS-18-005
RFA-MH-17-220
RFA-MH-17-255
RFA-EB-15-006
RFA-NS-16-006
RFA-NS-17-004 |
2019 |
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Brain-Computer Interface with Inhibitory Neurons Reveals Subtype-Specific Strategies. |
Mitani, Akinori; Dong, Mingyuan; Komiyama, Takaki; |
RFA-NS-15-005 |
2017 |
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Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. |
Kim, Yongsoo; Yang, Guangyu Robert; Pradhan, Kith; Venkataraju, Kannan Umadevi; Bota, Mihail; García Del Molino, Luis Carlos; Fitzgerald, Greg; Ram, Keerthi; He, Miao; Levine, Jesse Maurica; Mitra, Partha; Huang, Z Josh; Wang, Xiao-Jing; Osten, Pavel; |
RFA-MH-14-215 |
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Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. |
Chen, Xiuye; Mu, Yu; Hu, Yu; Kuan, Aaron T; Nikitchenko, Maxim; Randlett, Owen; Chen, Alex B; Gavornik, Jeffery P; Sompolinsky, Haim; Engert, Florian; Ahrens, Misha B; |
RFA-NS-14-009 |
2017 |
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Building and Breaking Bonds via a Compact S-Propargyl-Cysteine to Chemically Control Enzymes and Modify Proteins. |
Liu, Jun; Cheng, Rujin; Wu, Haifan; Li, Shanshan; Wang, Peng G; DeGrado, William F; Rozovsky, Sharon; Wang, Lei; |
RFA-MH-17-220 |
2018 |
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cAMP-inducible coactivator CRTC3 attenuates brown adipose tissue thermogenesis. |
Yoon, Young-Sil; Tsai, Wen-Wei; Van de Velde, Sam; Chen, Zhijiang; Lee, Kuo-Fen; Morgan, Donald A; Rahmouni, Kamal; Matsumura, Shigenobu; Wiater, Ezra; Song, Youngsup; Montminy, Marc; |
RFA-MH-17-225 |
2018 |
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Cell Membrane Tracking in Living Brain Tissue Using Differential Interference Contrast Microscopy. |
Lee, John; Kolb, Ilya; Forest, Craig R; Rozell, Christopher J; |
RFA-MH-14-216 |
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Changes in the enhancer landscape during early placental development uncover a trophoblast invasion gene-enhancer network. |
Tuteja, Geetu; Chung, Tisha; Bejerano, Gill; |
RFA-MH-14-215 |
2015 |
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Chloride Dysregulation, Seizures, and Cerebral Edema: A Relationship with Therapeutic Potential. |
Glykys, Joseph; Dzhala, Volodymyr; Egawa, Kiyoshi; Kahle, Kristopher T; Delpire, Eric; Staley, Kevin; |
RFA-MH-14-216 |
2017 |
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Chromosome conformation elucidates regulatory relationships in developing human brain. |
Won, Hyejung; de la Torre-Ubieta, Luis; Stein, Jason L; Parikshak, Neelroop N; Huang, Jerry; Opland, Carli K; Gandal, Michael J; Sutton, Gavin J; Hormozdiari, Farhad; Lu, Daning; Lee, Changhoon; Eskin, Eleazar; Voineagu, Irina; Ernst, Jason; Geschwind, Daniel H; |
RFA-MH-14-215 |
2016 |
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Circuit Mechanisms of Sensorimotor Learning. |
Makino, Hiroshi; Hwang, Eun Jung; Hedrick, Nathan G; Komiyama, Takaki; |
RFA-NS-15-005 |
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Circuit-based frameworks of depressive behaviors: The role of reward circuitry and beyond. |
Knowland, Daniel; Lim, Byung Kook; |
RFA-NS-15-005 |
2017 |
Cell Type
Circuit Diagrams
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Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions. |
McElvain, Lauren E; Friedman, Beth; Karten, Harvey J; Svoboda, Karel; Wang, Fan; Deschênes, Martin; Kleinfeld, David; |
RFA-NS-14-009 |
2017 |
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Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. |
Jeong, Minju; Kim, Yongsoo; Kim, Jeongjin; Ferrante, Daniel D; Mitra, Partha P; Osten, Pavel; Kim, Daesoo; |
RFA-MH-14-215 |
2016 |
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Complementary networks of cortical somatostatin interneurons enforce layer specific control. |
Naka, Alexander; Veit, Julia; Shababo, Ben; Chance, Rebecca K; Risso, Davide; Stafford, David; Snyder, Benjamin; Egladyous, Andrew; Chu, Desiree; Sridharan, Savitha; Mossing, Daniel P; Paninski, Liam; Ngai, John; Adesnik, Hillel; |
RFA-MH-17-225 |
2019 |
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Circuit Diagrams
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Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics. |
Shekhar, Karthik; Lapan, Sylvain W; Whitney, Irene E; Tran, Nicholas M; Macosko, Evan Z; Kowalczyk, Monika; Adiconis, Xian; Levin, Joshua Z; Nemesh, James; Goldman, Melissa; McCarroll, Steven A; Cepko, Constance L; Regev, Aviv; Sanes, Joshua R; |
RFA-MH-14-215 |
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Comprehensive comparative analysis of 5'-end RNA-sequencing methods. |
Adiconis, Xian; Haber, Adam L; Simmons, Sean K; Levy Moonshine, Ami; Ji, Zhe; Busby, Michele A; Shi, Xi; Jacques, Justin; Lancaster, Madeline A; Pan, Jen Q; Regev, Aviv; Levin, Joshua Z; |
RFA-MH-14-215 |
2018 |
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Conserved cell types with divergent features in human versus mouse cortex. |
Hodge, Rebecca D; Bakken, Trygve E; Miller, Jeremy A; Smith, Kimberly A; Barkan, Eliza R; Graybuck, Lucas T; Close, Jennie L; Long, Brian; Johansen, Nelson; Penn, Osnat; Yao, Zizhen; Eggermont, Jeroen; Höllt, Thomas; Levi, Boaz P; Shehata, Soraya I; Aevermann, Brian; Beller, Allison; Bertagnolli, Darren; Brouner, Krissy; Casper, Tamara; Cobbs, Charles; Dalley, Rachel; Dee, Nick; Ding, Song-Lin; Ellenbogen, Richard G; Fong, Olivia; Garren, Emma; Goldy, Jeff; Gwinn, Ryder P; Hirschstein, Daniel; Keene, C Dirk; Keshk, Mohamed; Ko, Andrew L; Lathia, Kanan; Mahfouz, Ahmed; Maltzer, Zoe; McGraw, Me |
RFA-MH-17-210 |
2019 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Container-Based Clinical Solutions for Portable and Reproducible Image Analysis. |
Matelsky, Jordan; Kiar, Gregory; Johnson, Erik; Rivera, Corban; Toma, Michael; Gray-Roncal, William; |
RFA-MH-17-257 |
2018 |
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Continued access to investigational brain implants. |
Lázaro-Muñoz, Gabriel; Yoshor, Daniel; Beauchamp, Michael S; Goodman, Wayne K; McGuire, Amy L; |
RFA-MH-17-260, RFA-NS-16-008, RFA-NS-16-010 |
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Coordination of Orofacial Motor Actions into Exploratory Behavior by Rat. |
Kurnikova, Anastasia; Moore, Jeffrey D; Liao, Song-Mao; Deschênes, Martin; Kleinfeld, David; |
RFA-NS-14-009 |
2017 |
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Correlating Anatomy and Function with Gene Expression in Individual Neurons by Combining Labeling, Patch Clamp, and Single Cell RNA-seq. |
Pfeffer, Carsten K; Beltramo, Riccardo; |
RFA-MH-14-215 |
2017 |
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Corrigendum: Simultaneous high-speed imaging and optogenetic inhibition in the intact mouse brain. |
Bovetti, Serena; Moretti, Claudio; Zucca, Stefano; Dal Maschio, Marco; Bonifazi, Paolo; Fellin, Tommaso; |
RFA-NS-14-009 |
2017 |
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Cortical Entropy, Mutual Information and Scale-Free Dynamics in Waking Mice. |
Fagerholm, Erik D; Scott, Gregory; Shew, Woodrow L; Song, Chenchen; Leech, Robert; Knöpfel, Thomas; Sharp, David J; |
RFA-NS-16-006 |
2016 |
Cell Type
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Cortical signatures of wakeful somatosensory processing. |
Song, Chenchen; Piscopo, Denise M; Niell, Cristopher M; Knöpfel, Thomas; |
RFA-MH-15-225 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
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Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines. |
Esteban, Oscar; Blair, Ross W; Nielson, Dylan M; Varada, Jan C; Marrett, Sean; Thomas, Adam G; Poldrack, Russell A; Gorgolewski, Krzysztof J; |
RFA-MH-17-256
RFA-MH-17-255 |
2019 |
|
Crystal structure of a natural light-gated anion channelrhodopsin. |
Li, Hai; Huang, Chia-Ying; Govorunova, Elena G; Schafer, Christopher T; Sineshchekov, Oleg A; Wang, Meitian; Zheng, Lei; Spudich, John L; |
RFA-MH-15-225 |
2019 |
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Interventional Tools
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Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. |
Fletcher, Russell B; Das, Diya; Gadye, Levi; Street, Kelly N; Baudhuin, Ariane; Wagner, Allon; Cole, Michael B; Flores, Quetzal; Choi, Yoon Gi; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine; Risso, Davide; Ngai, John; |
RFA-MH-14-215 |
2017 |
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Design strategies for dynamic closed-loop optogenetic neurocontrol in vivo. |
Bolus, M F; Willats, A A; Whitmire, C J; Rozell, C J; Stanley, G B; |
RFA-NS-15-005 |
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Developmental Decrease of Neuronal Chloride Concentration Is Independent of Trauma in Thalamocortical Brain Slices. |
Glykys, Joseph; Staley, Kevin J; |
RFA-MH-14-216 |
2016 |
Cell Type
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Developmental diversification of cortical inhibitory interneurons. |
Mayer, Christian; Hafemeister, Christoph; Bandler, Rachel C; Machold, Robert; Batista Brito, Renata; Jaglin, Xavier; Allaway, Kathryn; Butler, Andrew; Fishell, Gord; Satija, Rahul; |
RFA-MH-16-775 |
2017 |
Cell Type
Circuit Diagrams
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Different Inhibitory Interneuron Cell Classes Make Distinct Contributions to Visual Contrast Perception. |
Cone, Jackson J; Scantlen, Megan D; Histed, Mark H; Maunsell, John H R; |
RFA-NS-14-009 |
2019 |
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Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. |
Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; , ; |
RFA-EB-17-003 |
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Digital tissue and what it may reveal about the brain. |
Morgan, Josh L; Lichtman, Jeff W; |
RFA-NS-14-009 |
2017 |
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Distinct Contribution of Adult-Born Hippocampal Granule Cells to Context Encoding. |
Danielson, Nathan B; Kaifosh, Patrick; Zaremba, Jeffrey D; Lovett-Barron, Matthew; Tsai, Joseph; Denny, Christine A; Balough, Elizabeth M; Goldberg, Alexander R; Drew, Liam J; Hen, René; Losonczy, Attila; Kheirbek, Mazen A; |
RFA-NS-14-009 |
2016 |
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Distinct descending motor cortex pathways and their roles in movement. |
Economo, Michael N; Viswanathan, Sarada; Tasic, Bosiljka; Bas, Erhan; Winnubst, Johan; Menon, Vilas; Graybuck, Lucas T; Nguyen, Thuc Nghi; Smith, Kimberly A; Yao, Zizhen; Wang, Lihua; Gerfen, Charles R; Chandrashekar, Jayaram; Zeng, Hongkui; Looger, Loren L; Svoboda, Karel; |
MH-14-215 |
2018 |
Cell Type
Human Neuroscience
Integrated Approaches
Interventional Tools
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Distinct roles of visual, parietal, and frontal motor cortices in memory-guided sensorimotor decisions. |
Goard, Michael J; Pho, Gerald N; Woodson, Jonathan; Sur, Mriganka; |
RFA-NS-14-009 |
2016 |
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Diverse Central Projection Patterns of Retinal Ganglion Cells. |
Martersteck, Emily M; Hirokawa, Karla E; Evarts, Mariah; Bernard, Amy; Duan, Xin; Li, Yang; Ng, Lydia; Oh, Seung W; Ouellette, Benjamin; Royall, Joshua J; Stoecklin, Michelle; Wang, Quanxin; Zeng, Hongkui; Sanes, Joshua R; Harris, Julie A; |
RFA-MH-14-215 |
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DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging. |
Agasti, Sarit S; Wang, Yu; Schueder, Florian; Sukumar, Aishwarya; Jungmann, Ralf; Yin, Peng; |
RFA-MH-14-216 |
2017 |
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DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images. |
Kulikov, Victor; Guo, Syuan-Ming; Stone, Matthew; Goodman, Allen; Carpenter, Anne; Bathe, Mark; Lempitsky, Victor; |
RFA-MH-14-216 |
2019 |
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Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass. |
Menegas, William; Bergan, Joseph F; Ogawa, Sachie K; Isogai, Yoh; Umadevi Venkataraju, Kannan; Osten, Pavel; Uchida, Naoshige; Watabe-Uchida, Mitsuko; |
RFA-MH-14-215 |
2015 |
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Down Syndrome Developmental Brain Transcriptome Reveals Defective Oligodendrocyte Differentiation and Myelination. |
Olmos-Serrano, Jose Luis; Kang, Hyo Jung; Tyler, William A; Silbereis, John C; Cheng, Feng; Zhu, Ying; Pletikos, Mihovil; Jankovic-Rapan, Lucija; Cramer, Nathan P; Galdzicki, Zygmunt; Goodliffe, Joseph; Peters, Alan; Sethares, Claire; Delalle, Ivana; Golden, Jeffrey A; Haydar, Tarik F; Sestan, Nenad; |
RFA-MH-14-215 |
2016 |
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DREADD Agonist 21 Is an Effective Agonist for Muscarinic-Based DREADDs in Vitro and in Vivo |
Thompson, Karen J; Khajehali, Elham; Bradley, Sophie J; Navarrete, Jovana S; Huang, Xi Ping; Slocum, Samuel; Jin, Jian; Liu, Jing; Xiong, Yan; Olsen, Reid H J; Diberto, Jeffrey F; Boyt, Kristen M; Pina, Melanie M; Pati, Dipanwita; Molloy, Colin; Bundgaard, Christoffer; Sexton, Patrick M; Kash, Thomas L; Krashes, Michael J; Christopoulos, Arthur; Roth, Bryan L; Tobin, Andrew B; |
RFA-MH-14-216 |
2018 |
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Circuit Diagrams
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DREADDs for Neuroscientists. |
Roth, Bryan L; |
RFA-MH-14-216 |
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Cell Type
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Interventional Tools
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Dynamic DNA methylation: In the right place at the right time. |
Luo, Chongyuan; Hajkova, Petra; Ecker, Joseph R; |
RFA-MH-17-225 |
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Cell Type
Circuit Diagrams
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Dynamic, Cell-Type-Specific Roles for GABAergic Interneurons in a Mouse Model of Optogenetically Inducible Seizures. |
Khoshkhoo, Sattar; Vogt, Daniel; Sohal, Vikaas S; |
RFA-MH-14-216 |
2016 |
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Early emergence of cortical interneuron diversity in the mouse embryo. |
Mi, Da; Li, Zhen; Lim, Lynette; Li, Mingfeng; Moissidis, Monika; Yang, Yifei; Gao, Tianliuyun; Hu, Tim Xiaoming; Pratt, Thomas; Price, David J; Sestan, Nenad; Marín, Oscar; |
RFA-MH-14-215 |
2018 |
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Electrical Microstimulation of Visual Cerebral Cortex Elevates Psychophysical Detection Thresholds. |
Cone, Jackson J; Ni, Amy M; Ghose, Kaushik; Maunsell, John H R; |
RFA-NS-14-009
RFA-NS-17-018 |
2018 |
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Electromagnetic Regulation of Cell Activity. |
Stanley, Sarah A; Friedman, Jeffrey M; |
RFA-MH-14-216 |
2018 |
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Elucidation of The Behavioral Program and Neuronal Network Encoded by Dorsal Raphe Serotonergic Neurons. |
Urban, Daniel J; Zhu, Hu; Marcinkiewcz, Catherine A; Michaelides, Michael; Oshibuchi, Hidehiro; Rhea, Darren; Aryal, Dipendra K; Farrell, Martilias S; Lowery-Gionta, Emily; Olsen, Reid H J; Wetsel, William C; Kash, Thomas L; Hurd, Yasmin L; Tecott, Laurence H; Roth, Bryan L; |
RFA-MH-14-216 |
2015 |
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Embedded ensemble encoding hypothesis: The role of the "Prepared" cell. |
Antic, Srdjan D; Hines, Michael; Lytton, William W; |
RFA-MH-15-225 |
2018 |
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Engineering the Genetic Code in Cells and Animals: Biological Considerations and Impacts. |
Wang, Lei; |
RFA-MH-17-220 |
2017 |
Cell Type
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Entorhinal-CA3 Dual-Input Control of Spike Timing in the Hippocampus by Theta-Gamma Coupling. |
Fernández-Ruiz, Antonio; Oliva, Azahara; Nagy, Gergő A; Maurer, Andrew P; Berényi, Antal; Buzsáki, György; |
RFA-NS-14-009 |
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Epigenetics. Exceptional epigenetics in the brain. |
Luo, Chongyuan; Ecker, Joseph R; |
RFA-MH-14-215 |
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Epigenomic landscapes of retinal rods and cones. |
Mo, Alisa; Luo, Chongyuan; Davis, Fred P; Mukamel, Eran A; Henry, Gilbert L; Nery, Joseph R; Urich, Mark A; Picard, Serge; Lister, Ryan; Eddy, Sean R; Beer, Michael A; Ecker, Joseph R; Nathans, Jeremy; |
RFA-MH-14-215 |
2016 |
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Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories. |
Guturu, Harendra; Chinchali, Sandeep; Clarke, Shoa L; Bejerano, Gill; |
RFA-MH-14-215 |
2016 |
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Ethical Challenges of Risk, Informed Consent, and Posttrial Responsibilities in Human Research With Neural Devices: A Review. |
Hendriks, Saskia; Grady, Christine; Ramos, Khara M; Chiong, Winston; Fins, Joseph J; Ford, Paul; Goering, Sara; Greely, Henry T; Hutchison, Katrina; Kelly, Michael L; Kim, Scott Y H; Klein, Eran; Lisanby, Sarah H; Mayberg, Helen; Maslen, Hannah; Miller, Franklin G; Rommelfanger, Karen; Sheth, Sameer A; Wexler, Anna; |
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2019 |
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Evolution of C-terminal modification tolerance in full-length and split T7 RNA Polymerase biosensors. |
Pu, Jinyue; Disare, Michael; Dickinson, Bryan; |
RFA-MH-17-220 |
2019 |
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Exploring the Fundamental Structures of Life: Non-targeted, Chemical Analysis of Single Cells and Subcellular Structures. |
Neumann, Elizabeth K; Do, Thanh D; Comi, Troy J; Sweedler, Jonathan; |
MH-15-225 |
2018 |
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Human Neuroscience
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Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. |
Nowakowski, Tomasz J; Pollen, Alex A; Di Lullo, Elizabeth; Sandoval-Espinosa, Carmen; Bershteyn, Marina; Kriegstein, Arnold R; |
RFA-MH-14-215 |
2016 |
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Extending the Time Domain of Neuronal Silencing with Cryptophyte Anion Channelrhodopsins. |
Govorunova, Elena G; Sineshchekov, Oleg A; Hemmati, Raheleh; Janz, Roger; Morelle, Olivier; Melkonian, Michael; Wong, Gane K-S; Spudich, John L; |
RFA-MH-15-225 |
2018 |
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Extracting neuronal functional network dynamics via adaptive Granger causality analysis. |
Sheikhattar, Alireza; Miran, Sina; Liu, Ji; Fritz, Jonathan B; Shamma, Shihab A; Kanold, Patrick O; Babadi, Behtash; |
RFA-NS-14-009 |
2018 |
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Fast and Stable Signal Deconvolution via Compressible State-Space Models. |
Kazemipour, Abbas; Liu, Ji; Solarana, Krystyna; Nagode, Daniel A; Kanold, Patrick O; Wu, Min; Babadi, Behtash; |
RFA-NS-14-009 |
2017 |
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FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data. |
DeTomaso, David; Yosef, Nir; |
RFA-MH-14-215 |
2016 |
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Fear extinction requires infralimbic cortex projections to the basolateral amygdala. |
Bloodgood, Daniel W; Sugam, Jonathan A; Holmes, Andrew; Kash, Thomas L; |
RFA-MH-14-216 |
2018 |
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Feedback in the brainstem: an excitatory disynaptic pathway for control of whisking. |
Matthews, David W; Deschênes, Martin; Furuta, Takahiro; Moore, Jeffrey D; Wang, Fan; Karten, Harvey J; Kleinfeld, David; |
RFA-NS-14-009 |
2015 |
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Filopodia Conduct Target Selection in Cortical Neurons Using Differences in Signal Kinetics of a Single Kinase. |
Mao, Yu-Ting; Zhu, Julia X; Hanamura, Kenji; Iurilli, Giuliano; Datta, Sandeep Robert; Dalva, Matthew B; |
RFA-NS-15-005 |
2018 |
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Firing rate models for gamma oscillations. |
Keeley, Stephen; Byrne, Áine; Fenton, André; Rinzel, John; |
RFA-MH-17-250 |
2019 |
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FlpStop, a tool for conditional gene control in . |
Fisher, Yvette E; Yang, Helen H; Isaacman-Beck, Jesse; Xie, Marjorie; Gohl, Daryl M; Clandinin, Thomas R; |
RFA-MH-15-225 |
2017 |
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From trans to cis: transcriptional regulatory networks in neocortical development. |
Shibata, Mikihito; Gulden, Forrest O; Sestan, Nenad; |
RFA-MH-14-215 |
2015 |
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From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response. |
Naumann, Eva A; Fitzgerald, James E; Dunn, Timothy W; Rihel, Jason; Sompolinsky, Haim; Engert, Florian; |
RFA-NS-14-009 |
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Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding. |
Kadakia, Nirag; Emonet, Thierry; |
RFA-MH-18-510 |
2019 |
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Functional Access to Neuron Subclasses in Rodent and Primate Forebrain. |
Mehta, Preeti; Kreeger, Lauren; Wylie, Dennis C; Pattadkal, Jagruti J; Lusignan, Tara; Davis, Matthew J; Turi, Gergely F; Li, Wen-Ke; Whitmire, Matthew P; Chen, Yuzhi; Kajs, Bridget L; Seidemann, Eyal; Priebe, Nicholas J; Losonczy, Attila; Zemelman, Boris V; |
RFA-NS-15-005 |
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Functional divisions for visual processing in the central brain of flying Drosophila. |
Weir, Peter T; Dickinson, Michael H; |
RFA-NS-14-009 |
2015 |
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Functional Maps of Mechanosensory Features in the Drosophila Brain. |
Patella, Paola; Wilson, Rachel I; |
RFA-NS-14-009 |
2018 |
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Genetic approaches to access cell types in mammalian nervous systems. |
He, Miao; Huang, Z Josh; |
RFA-MH-17-225 |
2018 |
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Genetically encoded fluorescent biosensors illuminate kinase signaling in cancer. |
Lin, Wei; Mehta, Sohum; Zhang, Jin; |
RFA-MH-16-775 |
2019 |
Cell Type
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Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks. |
Greenwald, Eric C; Mehta, Sohum; Zhang, Jin; |
RFA-MH-16-775 |
2018 |
Cell Type
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Genetically Encoding Fluorosulfate-l-tyrosine To React with Lysine, Histidine, and Tyrosine via SuFEx in Proteins in Vivo. |
Wang, Nanxi; Yang, Bing; Fu, Caiyun; Zhu, He; Zheng, Feng; Kobayashi, Tomonori; Liu, Jun; Li, Shanshan; Ma, Cheng; Wang, Peng G; Wang, Qian; Wang, Lei; |
RFA-MH-17-220 |
2018 |
Cell Type
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Genetically encoding photoswitchable click amino acids for general optical control of conformation and function of proteins. |
Hoppmann, Christian; Wang, Lei; |
RFA-MH-17-220 |
2019 |
Cell Type
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Genetically Encoding Quinoline Reverses Chromophore Charge and Enables Fluorescent Protein Brightening in Acidic Vesicles. |
Fu, Caiyun; Kobayashi, Tomonori; Wang, Nanxi; Hoppmann, Christian; Yang, Bing; Irannejad, Roshanak; Wang, Lei; |
RFA-MH-17-220 |
2018 |
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Genetically Encoding Unnatural Amino Acids in Neurons In Vitro and in the Embryonic Mouse Brain for Optical Control of Neuronal Proteins. |
Kang, Ji-Yong; Kawaguchi, Daichi; Wang, Lei; |
RFA-MH-17-220 |
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Cell Type
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Genetically expressed voltage sensor ArcLight for imaging large scale cortical activity in the anesthetized and awake mouse. |
Borden, Peter Y; Ortiz, Alex D; Waiblinger, Christian; Sederberg, Audrey J; Morrissette, Arthur E; Forest, Craig R; Jaeger, Dieter; Stanley, Garrett B; |
RFA-NS-15-005 |
2017 |
Cell Type
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Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins. |
Yang, Bing; Wang, Nanxi; Schnier, Paul D; Zheng, Feng; Zhu, He; Polizzi, Nicholas F; Ittuveetil, Avinash; Saikam, Varma; DeGrado, William F; Wang, Qian; Wang, Peng G; Wang, Lei; |
RFA-MH-17-220 |
2019 |
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Genetically-directed Sparse Neuronal Labeling in BAC Transgenic Mice through Mononucleotide Repeat Frameshift. |
Lu, Xiao-Hong; Yang, X William; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
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Grid Cells and Place Cells: An Integrated View of their Navigational and Memory Function. |
Sanders, Honi; Rennó-Costa, César; Idiart, Marco; Lisman, John; |
RFA-NS-14-009 |
2015 |
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h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex. |
Kalmbach, Brian E; Buchin, Anatoly; Long, Brian; Close, Jennie; Nandi, Anirban; Miller, Jeremy A; Bakken, Trygve E; Hodge, Rebecca D; Chong, Peter; de Frates, Rebecca; Dai, Kael; Maltzer, Zoe; Nicovich, Philip R; Keene, C Dirk; Silbergeld, Daniel L; Gwinn, Ryder P; Cobbs, Charles; Ko, Andrew L; Ojemann, Jeffrey G; Koch, Christof; Anastassiou, Costas A; Lein, Ed S; Ting, Jonathan T; |
RFA-MH-17-210 |
2017 |
Cell Type
Circuit Diagrams
Human Neuroscience
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High-Accuracy Detection of Neuronal Ensemble Activity in Two-Photon Functional Microscopy Using Smart Line Scanning. |
Brondi, Marco; Moroni, Monica; Vecchia, Dania; Molano-Mazón, Manuel; Panzeri, Stefano; Fellin, Tommaso; |
RFA-NS-14-009
RFA-NS-17-018 |
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High-Density Stretchable Electrode Grids for Chronic Neural Recording. |
Tybrandt, Klas; Khodagholy, Dion; Dielacher, Bernd; Stauffer, Flurin; Renz, Aline F; Buzsáki, György; Vörös, János; |
RFA-NS-16-007 |
2018 |
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High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing. |
Moffitt, Jeffrey R; Hao, Junjie; Bambah-Mukku, Dhananjay; Lu, Tian; Dulac, Catherine; Zhuang, Xiaowei; |
RFA-MH-16-775 |
2016 |
Cell Type
Circuit Diagrams
Human Neuroscience
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High-resolution, high-throughput imaging with a multibeam scanning electron microscope. |
Eberle, A L; Mikula, S; Schalek, R; Lichtman, J; Knothe Tate, M L; Zeidler, D; |
RFA-NS-14-009 |
2015 |
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. |
Macosko, Evan Z; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R; Kamitaki, Nolan; Martersteck, Emily M; Trombetta, John J; Weitz, David A; Sanes, Joshua R; Shalek, Alex K; Regev, Aviv; McCarroll, Steven A; |
RFA-MH-14-215 |
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History-based action selection bias in posterior parietal cortex. |
Hwang, Eun Jung; Dahlen, Jeffrey E; Mukundan, Madan; Komiyama, Takaki; |
RFA-NS-15-005 |
2017 |
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Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications. |
Zhang, Yu Shrike; Chang, Jae-Byum; Alvarez, Mario Moisés; Trujillo-de Santiago, Grissel; Aleman, Julio; Batzaya, Byambaa; Krishnadoss, Vaishali; Ramanujam, Aishwarya Aravamudhan; Kazemzadeh-Narbat, Mehdi; Chen, Fei; Tillberg, Paul W; Dokmeci, Mehmet Remzi; Boyden, Edward S; Khademhosseini, Ali; |
RFA-MH-14-216 |
2016 |
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Hypocretin as a Hub for Arousal and Motivation. |
Tyree, Susan M; Borniger, Jeremy C; de Lecea, Luis; |
RFA-MH-17-250 |
2018 |
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Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. |
Bhaduri, Aparna; Nowakowski, Tomasz J; Pollen, Alex A; Kriegstein, Arnold R; |
RFA-MH-14-215 |
2018 |
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iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. |
Holdgraf, Christopher; Appelhoff, Stefan; Bickel, Stephan; Bouchard, Kristofer; D'Ambrosio, Sasha; David, Olivier; Devinsky, Orrin; Dichter, Benjamin; Flinker, Adeen; Foster, Brett L; Gorgolewski, Krzysztof J; Groen, Iris; Groppe, David; Gunduz, Aysegul; Hamilton, Liberty; Honey, Christopher J; Jas, Mainak; Knight, Robert; Lachaux, Jean-Philippe; Lau, Jonathan C; Lee-Messer, Christopher; Lundstrom, Brian N; Miller, Kai J; Ojemann, Jeffrey G; Oostenveld, Robert; Petridou, Natalia; Piantoni, Gio; Pigorini, Andrea; Pouratian, Nader; Ramsey, Nick F; Stolk, Arjen; Swann, Nicole C; Tadel, François; |
RFA-MH-16-750
RFA-MH-17-256 |
2019 |
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Illuminating the kinome: Visualizing real-time kinase activity in biological systems using genetically encoded fluorescent protein-based biosensors. |
Schmitt, Danielle L; Mehta, Sohum; Zhang, Jin; |
RFA-MH-16-775 |
2020 |
Cell Type
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Imaging Cortical Dynamics in GCaMP Transgenic Rats with a Head-Mounted Widefield Macroscope. |
Scott, Benjamin B; Thiberge, Stephan Y; Guo, Caiying; Tervo, D Gowanlock R; Brody, Carlos D; Karpova, Alla Y; Tank, David W; |
RFA-NS-14-009
RFA-NS-17-018 |
2018 |
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Imaging ERK and PKA Activation in Single Dendritic Spines during Structural Plasticity. |
Tang, Shen; Yasuda, Ryohei; |
RFA-MH-16-775 |
2017 |
Cell Type
Circuit Diagrams
Human Neuroscience
Integrated Approaches
Interventional Tools
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Imaging neural activity in the ventral nerve cord of behaving adult Drosophila. |
Chen, Chin-Lin; Hermans, Laura; Viswanathan, Meera C; Fortun, Denis; Aymanns, Florian; Unser, Michael; Cammarato, Anthony; Dickinson, Michael H; Ramdya, Pavan; |
RFA-NS-14-009 |
2018 |
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Impaired hippocampal place cell dynamics in a mouse model of the 22q11.2 deletion. |
Zaremba, Jeffrey D; Diamantopoulou, Anastasia; Danielson, Nathan B; Grosmark, Andres D; Kaifosh, Patrick W; Bowler, John C; Liao, Zhenrui; Sparks, Fraser T; Gogos, Joseph A; Losonczy, Attila; |
RFA-NS-14-009 |
2017 |
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ImpulseDE: detection of differentially expressed genes in time series data using impulse models. |
Sander, Jil; Schultze, Joachim L; Yosef, Nir; |
RFA-MH-14-215 |
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Independent erosion of conserved transcription factor binding sites points to shared hindlimb, vision and external testes loss in different mammals. |
Berger, Mark J; Wenger, Aaron M; Guturu, Harendra; Bejerano, Gill; |
RFA-MH-14-215 |
2018 |
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Inference in the Brain: Statistics Flowing in Redundant Population Codes. |
Pitkow, Xaq; Angelaki, Dora E; |
RFA-NS-15-005 |
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Inferring transient particle transport dynamics in live cells. |
Monnier, Nilah; Barry, Zachary; Park, Hye Yoon; Su, Kuan-Chung; Katz, Zachary; English, Brian P; Dey, Arkajit; Pan, Keyao; Cheeseman, Iain M; Singer, Robert H; Bathe, Mark; |
RFA-MH-14-216 |
2015 |
Cell Type
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Inhibition decorrelates visual feature representations in the inner retina. |
Franke, Katrin; Berens, Philipp; Schubert, Timm; Bethge, Matthias; Euler, Thomas; Baden, Tom; |
RFA-NS-14-009 |
2017 |
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Inhibition, Not Excitation, Drives Rhythmic Whisking. |
Deschênes, Martin; Takatoh, Jun; Kurnikova, Anastasia; Moore, Jeffrey D; Demers, Maxime; Elbaz, Michael; Furuta, Takahiro; Wang, Fan; Kleinfeld, David; |
RFA-NS-14-009 |
2016 |
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Input-output organization of the mouse claustrum. |
Zingg, Brian; Dong, Hong-Wei; Tao, Huizhong Whit; Zhang, Li I; |
RFA-MH-14-216 |
2018 |
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Input-Specific Plasticity and Homeostasis at the Drosophila Larval Neuromuscular Junction. |
Newman, Zachary L; Hoagland, Adam; Aghi, Krishan; Worden, Kurtresha; Levy, Sabrina L; Son, Jun Ho; Lee, Luke P; Isacoff, Ehud Y; |
RFA-MH-15-225 |
2017 |
Cell Type
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Integrated circuits and molecular components for stress and feeding: implications for eating disorders. |
Hardaway, J A; Crowley, N A; Bulik, C M; Kash, T L; |
RFA-MH-14-216 |
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Interventional Tools
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Integrating Genomics into Psychiatric Practice: Ethical and Legal Challenges for Clinicians. |
Ward, Eric T; Kostick, Kristin M; Lázaro-Muñoz, Gabriel; |
RFA-MH-17-260 |
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Integration of autopatching with automated pipette and cell detection in vitro. |
Wu 吴秋雨, Qiuyu; Kolb, Ilya; Callahan, Brendan M; Su, Zhaolun; Stoy, William; Kodandaramaiah, Suhasa B; Neve, Rachael; Zeng, Hongkui; Boyden, Edward S; Forest, Craig R; Chubykin, Alexander A; |
RFA-MH-14-216 |
2016 |
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Circuit Diagrams
Interventional Tools
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Integration of cortical population signals for visual perception. |
Andrei, Ariana R; Pojoga, Sorin; Janz, Roger; Dragoi, Valentin; |
RFA-MH-15-225 |
2019 |
Cell Type
Circuit Diagrams
Interventional Tools
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Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks. |
Bienkowski, Michael S; Bowman, Ian; Song, Monica Y; Gou, Lin; Ard, Tyler; Cotter, Kaelan; Zhu, Muye; Benavidez, Nora L; Yamashita, Seita; Abu-Jaber, Jaspar; Azam, Sana; Lo, Darrick; Foster, Nicholas N; Hintiryan, Houri; Dong, Hong-Wei; |
RFA-MH-17-220 |
2017 |
Cell Type
Circuit Diagrams
Interventional Tools
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Interactions between small ankyrin 1 and sarcolipin coordinately regulate activity of the sarco(endo)plasmic reticulum Ca-ATPase (SERCA1). |
Desmond, Patrick F; Labuza, Amanda; Muriel, Joaquin; Markwardt, Michele L; Mancini, Allison E; Rizzo, Mark A; Bloch, Robert J; |
RFA-EB-17-003 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
Human Neuroscience
Integrated Approaches
Interventional Tools
Monitor Neural Activity
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Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. |
Bezaire, Marianne J; Raikov, Ivan; Burk, Kelly; Vyas, Dhrumil; Soltesz, Ivan; |
RFA-NS-14-009 |
2016 |
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Investigating metabolic regulation using targeted neuromodulation. |
Devarakonda, Kavya; Stanley, Sarah; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Joint representation of translational and rotational components of optic flow in parietal cortex. |
Sunkara, Adhira; DeAngelis, Gregory C; Angelaki, Dora E; |
RFA-NS-15-005 |
2016 |
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Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo. |
Wu, Jianglai; Liang, Yajie; Chen, Shuo; Hsu, Ching-Lung; Chavarha, Mariya; Evans, Stephen W; Shi, Dongqing; Lin, Michael Z; Tsia, Kevin K; Ji, Na; |
RFA-NS-17-004
RFA-MH-17-220
RFA-NS-17-003 |
2020 |
Cell Type
Circuit Diagrams
Interventional Tools
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Kinetics of Endogenous CaMKII Required for Synaptic Plasticity Revealed by Optogenetic Kinase Inhibitor. |
Murakoshi, Hideji; Shin, Myung Eun; Parra-Bueno, Paula; Szatmari, Erzsebet M; Shibata, Akihiro C E; Yasuda, Ryohei; |
RFA-EB-17-003 |
2017 |
Cell Type
Circuit Diagrams
Human Neuroscience
Integrated Approaches
Interventional Tools
Monitor Neural Activity
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Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. |
Raj, Bushra; Gagnon, James A; Schier, Alexander F; |
RFA-MH-14-215 |
2018 |
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Layer-Specific Physiological Features and Interlaminar Interactions in the Primary Visual Cortex of the Mouse. |
Senzai, Yuta; Fernandez-Ruiz, Antonio; Buzsáki, György; |
RFA-NS-14-009 |
2019 |
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Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry. |
Neumann, Elizabeth K; Ellis, Joseph F; Triplett, Amelia E; Rubakhin, Stanislav S; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2019 |
Cell Type
Circuit Diagrams
Interventional Tools
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Lipid heterogeneity between astrocytes and neurons revealed with single cell MALDI MS supervised by immunocytochemical classification. |
Neumann, Elizabeth K; Comi, Troy J; Rubakhin, Stanislav S; Sweedler, Jonathan; |
RFA-MH-15-225 |
2019 |
Cell Type
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Interventional Tools
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Live-cell imaging of cell signaling using genetically encoded fluorescent reporters. |
Ni, Qiang; Mehta, Sohum; Zhang, Jin; |
RFA-EB-17-003 |
2017 |
Cell Type
Circuit Diagrams
Human Neuroscience
Integrated Approaches
Interventional Tools
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Mammalian cortical voltage imaging using genetically encoded voltage indicators: a review honoring professor Amiram Grinvald. |
Song, Chenchen; Barnes, Samuel; Knöpfel, Thomas; |
RFA-MH-15-225 |
2017 |
Cell Type
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Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes. |
Renier, Nicolas; Adams, Eliza L; Kirst, Christoph; Wu, Zhuhao; Azevedo, Ricardo; Kohl, Johannes; Autry, Anita E; Kadiri, Lolahon; Umadevi Venkataraju, Kannan; Zhou, Yu; Wang, Victoria X; Tang, Cheuk Y; Olsen, Olav; Dulac, Catherine; Osten, Pavel; Tessier-Lavigne, Marc; |
RFA-MH-14-215 |
2016 |
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Mapping social behavior-induced brain activation at cellular resolution in the mouse. |
Kim, Yongsoo; Venkataraju, Kannan Umadevi; Pradhan, Kith; Mende, Carolin; Taranda, Julian; Turaga, Srinivas C; Arganda-Carreras, Ignacio; Ng, Lydia; Hawrylycz, Michael J; Rockland, Kathleen S; Seung, H Sebastian; Osten, Pavel; |
RFA-MH-14-215 |
2014 |
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Mapping Sub-Second Structure in Mouse Behavior. |
Wiltschko, Alexander B; Johnson, Matthew J; Iurilli, Giuliano; Peterson, Ralph E; Katon, Jesse M; Pashkovski, Stan L; Abraira, Victoria E; Adams, Ryan P; Datta, Sandeep Robert; |
RFA-NS-15-005 |
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Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain. |
Sugino, Ken; Clark, Erin; Schulmann, Anton; Shima, Yasuyuki; Wang, Lihua; Hunt, David L; Hooks, Bryan M; Tränkner, Dimitri; Chandrashekar, Jayaram; Picard, Serge; Lemire, Andrew L; Spruston, Nelson; Hantman, Adam W; Nelson, Sacha B; |
RFA-MH-14-215 |
2019 |
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Massively parallel single-nucleus RNA-seq with DroNc-seq. |
Habib, Naomi; Avraham-Davidi, Inbal; Basu, Anindita; Burks, Tyler; Shekhar, Karthik; Hofree, Matan; Choudhury, Sourav R; Aguet, François; Gelfand, Ellen; Ardlie, Kristin; Weitz, David A; Rozenblatt-Rosen, Orit; Zhang, Feng; Regev, Aviv; |
RFA-MH-14-215 |
2017 |
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Mechanisms of Ca/calmodulin-dependent kinase II activation in single dendritic spines. |
Chang, Jui-Yun; Nakahata, Yoshihisa; Hayano, Yuki; Yasuda, Ryohei; |
RFA-MH-16-775 |
2019 |
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Methods to investigate the structure and connectivity of the nervous system. |
Lee, Donghyung; Huang, Ting-Hao; De La Cruz, Aubrie; Callejas, Antuca; Lois, Carlos; |
RFA-MH-15-225 |
2017 |
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methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data. |
Kishore, Kamal; de Pretis, Stefano; Lister, Ryan; Morelli, Marco J; Bianchi, Valerio; Amati, Bruno; Ecker, Joseph R; Pelizzola, Mattia; |
RFA-MH-14-215 |
2015 |
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microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling. |
Comi, Troy J; Neumann, Elizabeth K; Do, Thanh D; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2017 |
Cell Type
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Interventional Tools
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Mnemonic Functions for Nonlinear Dendritic Integration in Hippocampal Pyramidal Circuits. |
Kaifosh, Patrick; Losonczy, Attila; |
RFA-NS-14-009 |
2016 |
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Molecular and Cellular Reorganization of Neural Circuits in the Human Lineage. |
Sousa, Andre M.M., Zhu Ying, Raghanti Mary Ann, Kitchen, Robert R. Onorati, Marco Tebbenkamp, Andrew T. N. Stutz, Bernardo Meyer, Kyle A. Li, Mingfeng Kawasawa, Yuka Imamura Liu, Fuchen Perez, Raquel Garcia Mele, Marta Carvalho, Tiago Skarcia, Mario Gulden, Forrest O. Pletikos, Mihovil Shihbata, Akemi Stephenson, Alexa R. Edler, Melissa K. Ely, John J. Elsworth, John D. Horvath, Thomas L. Hof, Patrick R. Hyde, Thomas M. Kleinman, Joel E. Weinberger, Daniel R. Reimers, Mark Lifton, Richard P. Mane, Shrikant M. Noonan, James P. State, Matthew W. Lein, Ed S. Knowles, James A... Sestan, Nenad |
RFA-MH-17-220 |
2017 |
Cell Type
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Human Neuroscience
Integrated Approaches
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Molecular fingerprinting of On-Off direction selective retinal ganglion cells across species and relevance to primate visual circuits. |
Dhande, Onkar S; Stafford, Benjamin K; Franke, Katrin; El-Danaf, Rana; Percival, Kumiko A; Phan, Ann H; Li, Peichao; Hansen, Bryan J; Nguyen, Phong L; Berens, Philipp; Taylor, W Rowland; Callaway, Edward; Euler, Thomas; Huberman, Andrew D; |
RFA-NS-14-009 |
2018 |
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Molecular identity of human outer radial glia during cortical development. |
Pollen, Alex A; Nowakowski, Tomasz J; Chen, Jiadong; Retallack, Hanna; Sandoval-Espinosa, Carmen; Nicholas, Cory R; Shuga, Joe; Liu, Siyuan John; Oldham, Michael C; Diaz, Aaron; Lim, Daniel A; Leyrat, Anne A; West, Jay A; Kriegstein, Arnold R; |
RFA-MH-14-215 |
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Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region. |
Moffitt, Jeffrey R; Bambah-Mukku, Dhananjay; Eichhorn, Stephen W; Vaughn, Eric; Shekhar, Karthik; Perez, Julio D; Rubinstein, Nimrod D; Hao, Junjie; Regev, Aviv; Dulac, Catherine; Zhuang, Xiaowei; |
RFA-MH-16-775 |
2018 |
Cell Type
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Monitoring cell-cell contacts in vivo in transgenic animals. |
Huang, Ting-Hao; Velho, Tarciso; Lois, Carlos; |
RFA-MH-15-225 |
2016 |
Cell Type
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Morphine paradoxically prolongs neuropathic pain in rats by amplifying spinal NLRP3 inflammasome activation. |
Grace, Peter M; Strand, Keith A; Galer, Erika L; Urban, Daniel J; Wang, Xiaohui; Baratta, Michael V; Fabisiak, Timothy J; Anderson, Nathan D; Cheng, Kejun; Greene, Lisa I; Berkelhammer, Debra; Zhang, Yingning; Ellis, Amanda L; Yin, Hang Hubert; Campeau, Serge; Rice, Kenner C; Roth, Bryan L; Maier, Steven F; Watkins, Linda R; |
RFA-MH-14-216 |
2016 |
Cell Type
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Motor thalamus supports striatum-driven reinforcement. |
Lalive, Arnaud L; Lien, Anthony D; Roseberry, Thomas K; Donahue, Christopher H; Kreitzer, Anatol C; |
RFA-NS-15-005 |
2018 |
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Multi-neuron intracellular recording in vivo via interacting autopatching robots. |
Kodandaramaiah, Suhasa B; Flores, Francisco J; Holst, Gregory L; Singer, Annabelle C; Han, Xue; Brown, Emery N; Boyden, Edward S; Forest, Craig R; |
RFA-MH-14-216 |
2018 |
Cell Type
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Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging. |
Neumann, Elizabeth K; Comi, Troy J; Spegazzini, Nicolas; Mitchell, Jennifer W; Rubakhin, Stanislav S; Gillette, Martha U; Bhargava, Rohit; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2018 |
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Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. |
Mayer, Simone; Chen, Jiadong; Velmeshev, Dmitry; Mayer, Andreas; Eze, Ugomma C; Bhaduri, Aparna; Cunha, Carlos E; Jung, Diane; Arjun, Arpana; Li, Emmy; Alvarado, Beatriz; Wang, Shaohui; Lovegren, Nils; Gonzales, Michael L; Szpankowski, Lukasz; Leyrat, Anne; West, Jay A A; Panagiotakos, Georgia; Alvarez-Buylla, Arturo; Paredes, Mercedes F; Nowakowski, Tomasz J; Pollen, Alex A; Kriegstein, Arnold R; |
RFA-MH-17-210 |
2019 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT. |
Schueder, Florian; Lara-Gutiérrez, Juanita; Beliveau, Brian J; Saka, Sinem K; Sasaki, Hiroshi M; Woehrstein, Johannes B; Strauss, Maximilian T; Grabmayr, Heinrich; Yin, Peng; Jungmann, Ralf; |
RFA-MH-14-216 |
2017 |
Cell Type
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Multiplexed and high-throughput neuronal fluorescence imaging with diffusible probes. |
Guo, Syuan-Ming; Veneziano, Remi; Gordonov, Simon; Li, Li; Danielson, Eric; Perez de Arce, Karen; Park, Demian; Kulesa, Anthony B; Wamhoff, Eike-Christian; Blainey, Paul C; Boyden, Edward S; Cottrell, Jeffrey R; Bathe, Mark; |
RFA-MH-14-217
RFA-MH-14-216 |
2019 |
Cell Type
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Human Neuroscience
Interventional Tools
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Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues. |
Ku, Taeyun; Swaney, Justin; Park, Jeong-Yoon; Albanese, Alexandre; Murray, Evan; Cho, Jae Hun; Park, Young-Gyun; Mangena, Vamsi; Chen, Jiapei; Chung, Kwanghun; |
RFA-NS-14-009 |
2016 |
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Multiplexed peroxidase-based electron microscopy labeling enables simultaneous visualization of multiple cell types. |
Zhang, Qiyu; Lee, Wei-Chung A; Paul, David L; Ginty, David D; |
RFA-MH-17-220 |
2019 |
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Neonatal Tbr1 Dosage Controls Cortical Layer 6 Connectivity. |
Fazel Darbandi, Siavash; Robinson Schwartz, Sarah E; Qi, Qihao; Catta-Preta, Rinaldo; Pai, Emily Ling-Lin; Mandell, Jeffrey D; Everitt, Amanda; Rubin, Anna; Krasnoff, Rebecca A; Katzman, Sol; Tastad, David; Nord, Alex S; Willsey, A Jeremy; Chen, Bin; State, Matthew W; Sohal, Vikaas S; Rubenstein, John L R; |
RFA-MH-14-216 |
2018 |
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Neural Circuit Inference from Function to Structure. |
Real, Esteban; Asari, Hiroki; Gollisch, Tim; Meister, Markus; |
RFA-NS-14-009 |
2017 |
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Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish. |
Dunn, Timothy W; Gebhardt, Christoph; Naumann, Eva A; Riegler, Clemens; Ahrens, Misha B; Engert, Florian; Del Bene, Filippo; |
RFA-NS-14-009 |
2016 |
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Neural immunoglobulin superfamily interaction networks. |
Zinn, Kai; Özkan, Engin; |
RFA-MH-15-225 |
2017 |
Cell Type
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Neural mechanisms of sensorimotor transformation and action selection. |
Huda, Rafiq; Goard, Michael J; Pho, Gerald N; Sur, Mriganka; |
RFA-NS-14-009 |
2018 |
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Neuroelectronics and Biooptics: Closed-Loop Technologies in Neurological Disorders. |
Krook-Magnuson, Esther; Gelinas, Jennifer N; Soltesz, Ivan; Buzsáki, György; |
RFA-NS-14-009 |
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Neuroethics and the NIH BRAIN Initiative. |
Ramos, Khara M; Rommelfanger, Karen S; Greely, Henry T; Koroshetz, Walter J; |
RFA-EB-17-003 |
2017 |
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Neuroethics for the National Institutes of Health BRAIN Initiative. |
Bianchi, Diana W; Cooper, Judith A; Gordon, Joshua A; Heemskerk, Jill; Hodes, Richard; Koob, George F; Koroshetz, Walter J; Shurtleff, David; Sieving, Paul A; Volkow, Nora D; Churchill, James D; Ramos, Khara M; |
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Neuroethics Guiding Principles for the NIH BRAIN Initiative. |
Greely, Henry T; Grady, Christine; Ramos, Khara M; Chiong, Winston; Eberwine, James; Farahany, Nita A; Johnson, L Syd M; Hyman, Bradley T; Hyman, Steven E; Rommelfanger, Karen S; Serrano, Elba E; |
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Neuroethics in the Age of Brain Projects. |
Greely, Henry T; Ramos, Khara M; Grady, Christine; |
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Neuroethics of Neuromodulation: An Update. |
Zuk, Peter; Torgerson, Laura; Sierra-Mercado, Demetrio; Lázaro-Muñoz, Gabriel; |
RFA-MH-17-260 |
2018 |
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Neuroethics Questions to Guide Ethical Research in the International Brain Initiatives. |
, ; Rommelfanger, Karen S; Jeong, Sung-Jin; Ema, Arisa; Fukushi, Tamami; Kasai, Kiyoto; Ramos, Khara M; Salles, Arleen; Singh, Ilina; |
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Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. |
Shepherd, Gordon M; Marenco, Luis; Hines, Michael L; Migliore, Michele; McDougal, Robert A; Carnevale, Nicholas T; Newton, Adam J H; Surles-Zeigler, Monique; Ascoli, Giorgio A; |
RFA-MH-17-230 |
2018 |
Cell Type
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Neuronal cell-type classification: challenges, opportunities and the path forward. |
Zeng, Hongkui; Sanes, Joshua R; |
RFA-MH-14-215 |
2017 |
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New Technologies for Elucidating Opioid Receptor Function. |
Bruchas, Michael R; Roth, Bryan L; |
RFA-MH-14-216 |
2016 |
Cell Type
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Interventional Tools
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Non-CG Methylation in the Human Genome. |
He, Yupeng; Ecker, Joseph R; |
RFA-MH-14-215 |
2015 |
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Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons. |
Chatterjee, Soumya; Sullivan, Heather A; MacLennan, Bryan J; Xu, Ran; Hou, YuanYuan; Lavin, Thomas K; Lea, Nicholas E; Michalski, Jacob E; Babcock, Kelsey R; Dietrich, Stephan; Matthews, Gillian A; Beyeler, Anna; Calhoon, Gwendolyn G; Glober, Gordon; Whitesell, Jennifer D; Yao, Shenqin; Cetin, Ali; Harris, Julie A; Zeng, Hongkui; Tye, Kay M; Reid, R Clay; Wickersham, Ian R; |
RFA-MH-14-216 |
2018 |
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications. |
Van den Berge, Koen; Perraudeau, Fanny; Soneson, Charlotte; Love, Michael I; Risso, Davide; Vert, Jean-Philippe; Robinson, Mark D; Dudoit, Sandrine; Clement, Lieven; |
RFA-MH-14-215 |
2018 |
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Observing the Assembly of Protein Complexes in Living Eukaryotic Cells in Super-Resolution Using refSOFI. |
Hertel, Fabian; Mo, Gary C H; Dedecker, Peter; Zhang, Jin; |
RFA-EB-17-003 |
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Human Neuroscience
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Interventional Tools
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On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. |
Lee, Brian C; Tward, Daniel J; Mitra, Partha P; Miller, Michael I; |
RFA-MH-17-225 |
2018 |
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Optical Control of Dopamine Receptors Using a Photoswitchable Tethered Inverse Agonist. |
Donthamsetti, Prashant C; Winter, Nils; Schönberger, Matthias; Levitz, Joshua; Stanley, Cherise; Javitch, Jonathan A; Isacoff, Ehud Y; Trauner, Dirk; |
RFA-NS-14-008
RFA-MH-15-225 |
2017 |
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Optical method for automated measurement of glass micropipette tip geometry. |
Stockslager, Max A; Capocasale, Christopher M; Holst, Gregory L; Simon, Michael D; Li, Yuanda; McGruder, Dustin J; Rousseau, Erin B; Stoy, William A; Sulchek, Todd; Forest, Craig R; |
RFA-MH-14-216 |
2016 |
Cell Type
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Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins. |
Do, Thanh D; Ellis, Joseph F; Neumann, Elizabeth K; Comi, Troy J; Tillmaand, Emily G; Lenhart, Ashley E; Rubakhin, Stanislav S; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2018 |
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Optoacoustic brain stimulation at submillimeter spatial precision. |
Jiang, Ying; Lee, Hyeon Jeong; Lan, Lu; Tseng, Hua-An; Yang, Chen; Man, Heng-Ye; Han, Xue; Cheng, Ji-Xin; |
RFA-NS-18-018 |
2020 |
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Optogenetic approaches for dissecting neuromodulation and GPCR signaling in neural circuits. |
Spangler, Skylar M; Bruchas, Michael R; |
RFA-EB-17-003 |
2016 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Optogenetic Visualization of Presynaptic Tonic Inhibition of Cerebellar Parallel Fibers. |
Berglund, Ken; Wen, Lei; Dunbar, Robert L; Feng, Guoping; Augustine, George J; |
RFA-MH-14-216 |
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Paradoxical network excitation by glutamate release from VGluT3 GABAergic interneurons. |
Pelkey, Kenneth A; Calvigioni, Daniela; Fang, Calvin; Vargish, Geoffrey; Ekins, Tyler; Auville, Kurt; Wester, Jason C; Lai, Mandy; Mackenzie-Gray Scott, Connie; Yuan, Xiaoqing; Hunt, Steven; Abebe, Daniel; Xu, Qing; Dimidschstein, Jordane; Fishell, Gordon; Chittajallu, Ramesh; McBain, Chris J; |
RFA-MH-16-775
RFA-MH-19-135 |
2020 |
Cell Type
Circuit Diagrams
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Interventional Tools
Human Neuroscience
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Parallel Inhibitory and Excitatory Trigemino-Facial Feedback Circuitry for Reflexive Vibrissa Movement. |
Bellavance, Marie-Andrée; Takatoh, Jun; Lu, Jinghao; Demers, Maxime; Kleinfeld, David; Wang, Fan; Deschênes, Martin; |
RFA-NS-14-009 |
2017 |
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Parallel Transformation of Tactile Signals in Central Circuits of Drosophila. |
Tuthill, John C; Wilson, Rachel I; |
RFA-NS-14-009 |
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Particle Tracking Facilitates Real Time Capable Motion Correction in 2D or 3D Two-Photon Imaging of Neuronal Activity. |
Aghayee, Samira; Winkowski, Daniel E; Bowen, Zachary; Marshall, Erin E; Harrington, Matt J; Kanold, Patrick O; Losert, Wolfgang; |
RFA-NS-14-009 |
2017 |
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PatcherBot: a single-cell electrophysiology robot for adherent cells and brain slices. |
Kolb, Ilya; Landry, Corey R; Yip, Mighten C; Lewallen, Colby F; Stoy, William A; Lee, John; Felouzis, Amanda; Yang, Bo; Boyden, Edward S; Rozell, Christopher J; Forest, Craig R; |
RFA-MH-14-216 |
2019 |
Cell Type
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Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. |
Cole, Michael B; Risso, Davide; Wagner, Allon; DeTomaso, David; Ngai, John; Purdom, Elizabeth; Dudoit, Sandrine; Yosef, Nir; |
RFA-MH-14-215
RFA-MH-17-225 |
2019 |
Cell Type
Circuit Diagrams
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Perspectives on defining cell types in the brain. |
Mukamel, Eran A; Ngai, John; |
RFA-MH-14-215 |
2017 |
Cell Type
Circuit Diagrams
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Phase-controlled, speckle-free holographic projection with applications in precision optogenetics. |
Aharoni, Tal; Shoham, Shy; |
RFA-NS-14-009 |
2018 |
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Precise segmentation of densely interweaving neuron clusters using G-Cut. |
Li, Rui; Zhu, Muye; Li, Junning; Bienkowski, Michael S; Foster, Nicholas N; Xu, Hanpeng; Ard, Tyler; Bowman, Ian; Zhou, Changle; Veldman, Matthew B; Yang, X William; Hintiryan, Houri; Zhang, Junsong; Dong, Hong-Wei; |
RFA-MH-14-216 |
2018 |
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Programmable RNA-binding protein composed of repeats of a single modular unit. |
Adamala, Katarzyna P; Martin-Alarcon, Daniel A; Boyden, Edward S; |
RFA-MH-14-216 |
2016 |
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Protection of tissue physicochemical properties using polyfunctional crosslinkers. |
Park, Young-Gyun; Sohn, Chang Ho; Chen, Ritchie; McCue, Margaret; Yun, Dae Hee; Drummond, Gabrielle T; Ku, Taeyun; Evans, Nicholas B; Oak, Hayeon Caitlyn; Trieu, Wendy; Choi, Heejin; Jin, Xin; Lilascharoen, Varoth; Wang, Ji; Truttmann, Matthias C; Qi, Helena W; Ploegh, Hidde L; Golub, Todd R; Chen, Shih-Chi; Frosch, Matthew P; Kulik, Heather J; Lim, Byung Kook; Chung, Kwanghun; |
RFA-MH-17-230 |
2017 |
Cell Type
Circuit Diagrams
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Proteomonas sulcata ACR1: A Fast Anion Channelrhodopsin. |
Govorunova, Elena G; Sineshchekov, Oleg A; Spudich, John L; |
RFA-MH-15-225 |
2016 |
Cell Type
Circuit Diagrams
Monitor Neural Activity
Interventional Tools
|
PSACNN: Pulse sequence adaptive fast whole brain segmentation. |
Jog, Amod; Hoopes, Andrew; Greve, Douglas N; Van Leemput, Koen; Fischl, Bruce; |
RFA-MH-17-210 |
2019 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography. |
Dyer, Eva L; Gray Roncal, William; Prasad, Judy A; Fernandes, Hugo L; Gürsoy, Doga; De Andrade, Vincent; Fezzaa, Kamel; Xiao, Xianghui; Vogelstein, Joshua T; Jacobsen, Chris; Körding, Konrad P; Kasthuri, Narayanan; |
RFA-MH-15-225 |
2017 |
Cell Type
Circuit Diagrams
Monitor Neural Activity
Interventional Tools
|
Radial Glial Lineage Progression and Differential Intermediate Progenitor Amplification Underlie Striatal Compartments and Circuit Organization. |
Kelly, Sean M; Raudales, Ricardo; He, Miao; Lee, Jannifer H; Kim, Yongsoo; Gibb, Leif G; Wu, Priscilla; Matho, Katherine; Osten, Pavel; Graybiel, Ann M; Huang, Z Josh; |
RFA-MH-14-215 |
2018 |
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Rbfox1 Mediates Cell-type-Specific Splicing in Cortical Interneurons. |
Wamsley, Brie; Jaglin, Xavier Hubert; Favuzzi, Emilia; Quattrocolo, Giulia; Nigro, Maximiliano José; Yusuf, Nusrath; Khodadadi-Jamayran, Alireza; Rudy, Bernardo; Fishell, Gord; |
RFA-NS-18-009
RFA-MH-16-775 |
2018 |
Cell Type
Circuit Diagrams
Integrated Approaches
Interventional Tools
Monitor Neural Activity
|
Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction. |
Mitani, Akinori; Komiyama, Takaki; |
RFA-NS-15-005 |
2018 |
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Recent advances in the use of genetically encodable optical tools to elicit and monitor signaling events. |
Lee, Ha Neul; Mehta, Sohum; Zhang, Jin; |
RFA-MH-16-775 |
2020 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
|
Recurrent Network Models of Sequence Generation and Memory. |
Rajan, Kanaka; Harvey, Christopher D; Tank, David W; |
RFA-NS-14-009 |
2016 |
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Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. |
Nowakowski, Tomasz J; Rani, Neha; Golkaram, Mahdi; Zhou, Hongjun R; Alvarado, Beatriz; Huch, Kylie; West, Jay A; Leyrat, Anne; Pollen, Alex A; Kriegstein, Arnold R; Petzold, Linda R; Kosik, Kenneth S; |
RFA-MH-14-215 |
2018 |
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Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials. |
Du, Ming; Jacobsen, Chris; |
RFA-MH-15-225 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Remote control of glucose-sensing neurons to analyze glucose metabolism. |
Alvarsson, Alexandra; Stanley, Sarah A; |
RFA-MH-14-216 |
2018 |
Cell Type
Circuit Diagrams
Human Neuroscience
Integrated Approaches
Interventional Tools
Monitor Neural Activity
|
Response-dependent dynamics of cell-specific inhibition in cortical networks in vivo. |
El-Boustani, Sami; Sur, Mriganka; |
RFA-NS-14-009 |
2014 |
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Revealing the vectors of cellular identity with single-cell genomics. |
Wagner, Allon; Regev, Aviv; Yosef, Nir; |
RFA-MH-14-215 |
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Robotic navigation to subcortical neural tissue for intracellular electrophysiology in vivo. |
Stoy, W A; Kolb, I; Holst, G L; Liew, Y; Pala, A; Yang, B; Boyden, E S; Stanley, G B; Forest, C R; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
Interventional Tools
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Robust single-cell DNA methylome profiling with snmC-seq2. |
Luo, Chongyuan; Rivkin, Angeline; Zhou, Jingtian; Sandoval, Justin P; Kurihara, Laurie; Lucero, Jacinta; Castanon, Rosa; Nery, Joseph R; Pinto-Duarte, António; Bui, Brian; Fitzpatrick, Conor; O'Connor, Carolyn; Ruga, Seth; Van Eden, Marc E; Davis, David A; Mash, Deborah C; Behrens, M Margarita; Ecker, Joseph R; |
RFA-MH-17-225, RFA-MH-14-215 |
2018 |
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Scanless functional imaging of hippocampal networks using patterned two-photon illumination through GRIN lenses. |
Moretti, Claudio; Antonini, Andrea; Bovetti, Serena; Liberale, Carlo; Fellin, Tommaso; |
RFA-NS-14-009 |
2016 |
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Scattering reduction by structured light illumination in line-scanning temporal focusing microscopy. |
Xue, Yi; Berry, Kalen P; Boivin, Josiah R; Wadduwage, Dushan; Nedivi, Elly; So, Peter T C; |
RFA-MH-17-250 |
2018 |
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SCell: integrated analysis of single-cell RNA-seq data. |
Diaz, Aaron; Liu, Siyuan J; Sandoval, Carmen; Pollen, Alex; Nowakowski, Tom J; Lim, Daniel A; Kriegstein, Arnold; |
RFA-MH-14-215 |
2016 |
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Serial representation of items during working memory maintenance at letter-selective cortical sites. |
Bahramisharif, Ali; Jensen, Ole; Jacobs, Joshua; Lisman, John; |
RFA-NS-14-009 |
2018 |
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Serotonin enhances excitability and gamma frequency temporal integration in mouse prefrontal fast-spiking interneurons. |
Athilingam, Jegath C; Ben-Shalom, Roy; Keeshen, Caroline M; Sohal, Vikaas S; Bender, Kevin J; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Sharp wave ripples during learning stabilize the hippocampal spatial map. |
Roux, Lisa; Hu, Bo; Eichler, Ronny; Stark, Eran; Buzsáki, György; |
RFA-NS-14-009 |
2017 |
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Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems. |
Murray, Evan; Cho, Jae Hun; Goodwin, Daniel; Ku, Taeyun; Swaney, Justin; Kim, Sung-Yon; Choi, Heejin; Park, Young-Gyun; Park, Jeong-Yoon; Hubbert, Austin; McCue, Margaret; Vassallo, Sara; Bakh, Naveed; Frosch, Matthew P; Wedeen, Van J; Seung, H Sebastian; Chung, Kwanghun; |
RFA-NS-14-009 |
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Simultaneous high-speed imaging and optogenetic inhibition in the intact mouse brain. |
Bovetti, Serena; Moretti, Claudio; Zucca, Stefano; Dal Maschio, Marco; Bonifazi, Paolo; Fellin, Tommaso; |
RFA-NS-14-009 |
2017 |
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Simultaneous recordings of voltage and current waveforms from dendrites. |
Antic, Srdjan D; |
RFA-MH-15-225 |
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Cell Type
Circuit Diagrams
Interventional Tools
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Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. |
Raj, Bushra; Wagner, Daniel E; McKenna, Aaron; Pandey, Shristi; Klein, Allon M; Shendure, Jay; Gagnon, James A; Schier, Alexander F; |
RFA-MH-14-215 |
2018 |
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Single Cell Neurometabolomics. |
Qi, Meng; Philip, Marina C; Yang, Ning; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2017 |
Cell Type
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Interventional Tools
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Single Cell Peptide Heterogeneity of Rat Islets of Langerhans. |
Jansson, Erik T; Comi, Troy J; Rubakhin, Stanislav S; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2016 |
Cell Type
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Interventional Tools
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Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation. |
Do, Thanh D; Comi, Troy J; Dunham, Sage J B; Rubakhin, Stanislav S; Sweedler, Jonathan V; |
RFA-MH-15-225 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Single-cell analysis of long non-coding RNAs in the developing human neocortex. |
Liu, Siyuan John; Nowakowski, Tomasz J; Pollen, Alex A; Lui, Jan H; Horlbeck, Max A; Attenello, Frank J; He, Daniel; Weissman, Jonathan S; Kriegstein, Arnold R; Diaz, Aaron A; Lim, Daniel A; |
RFA-MH-14-215 |
2016 |
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Single-cell genomics identifies cell type-specific molecular changes in autism. |
Velmeshev, Dmitry; Schirmer, Lucas; Jung, Diane; Haeussler, Maximilian; Perez, Yonatan; Mayer, Simone; Bhaduri, Aparna; Goyal, Nitasha; Rowitch, David H; Kriegstein, Arnold R; |
RFA-MH-17-210 |
2019 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Single-cell RNA Sequencing of Fluorescently Labeled Mouse Neurons Using Manual Sorting and Double In Vitro Transcription with Absolute Counts Sequencing (DIVA-Seq). |
Paul, Anirban; Huang, Z Josh; |
RFA-MH-17-225 |
2017 |
Cell Type
Circuit Diagrams
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Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. |
Chen, Renchao; Wu, Xiaoji; Jiang, Lan; Zhang, Yi; |
RFA-MH-14-215 |
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Single-color, ratiometric biosensors for detecting signaling activities in live cells. |
Ross, Brian L; Tenner, Brian; Markwardt, Michele L; Zviman, Adam; Shi, Guoli; Kerr, Jaclyn P; Snell, Nicole E; McFarland, Jennifer J; Mauban, Joseph R; Ward, Christopher W; Rizzo, Mark A; Zhang, Jin; |
RFA-MH-16-775 |
2018 |
Cell Type
Circuit Diagrams
Integrated Approaches
Monitor Neural Activity
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Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities. |
Mehta, Sohum; Zhang, Yong; Roth, Richard H; Zhang, Jin-Fan; Mo, Albert; Tenner, Brian; Huganir, Richard L; Zhang, Jin; |
MH-16-775 |
2018 |
Cell Type
Circuit Diagrams
Human Neuroscience
Integrated Approaches
Interventional Tools
Monitor Neural Activity
|
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. |
Preissl, Sebastian; Fang, Rongxin; Huang, Hui; Zhao, Yuan; Raviram, Ramya; Gorkin, David U; Zhang, Yanxiao; Sos, Brandon C; Afzal, Veena; Dickel, Diane E; Kuan, Samantha; Visel, Axel; Pennacchio, Len A; Zhang, Kun; Ren, Bing; |
RFA-MH-17-225 |
2018 |
Cell Type
Circuit Diagrams
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Site-Specific Incorporation of Selenocysteine Using an Expanded Genetic Code and Palladium-Mediated Chemical Deprotection. |
Liu, Jun; Zheng, Feng; Cheng, Rujin; Li, Shanshan; Rozovsky, Sharon; Wang, Qian; Wang, Lei; |
RFA-MH-17-220 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
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Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. |
Street, Kelly; Risso, Davide; Fletcher, Russell B; Das, Diya; Ngai, John; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine; |
RFA-MH-14-215 |
2018 |
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Somatostatin-Expressing Interneurons Enable and Maintain Learning-Dependent Sequential Activation of Pyramidal Neurons. |
Adler, Avital; Zhao, Ruohe; Shin, Myung Eun; Yasuda, Ryohei; Gan, Wen-Biao; |
RFA-MH-16-775
RFA-NS-18-009 |
2019 |
Cell Type
Circuit Diagrams
Integrated Approaches
Interventional Tools
Monitor Neural Activity
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Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex. |
Seeman, Stephanie C; Campagnola, Luke; Davoudian, Pasha A; Hoggarth, Alex; Hage, Travis A; Bosma-Moody, Alice; Baker, Christopher A; Lee, Jung Hoon; Mihalas, Stefan; Teeter, Corinne; Ko, Andrew L; Ojemann, Jeffrey G; Gwinn, Ryder P; Silbergeld, Daniel L; Cobbs, Charles; Phillips, John; Lein, Ed; Murphy, Gabe; Koch, Christof; Zeng, Hongkui; Jarsky, Tim; |
MH-14-215 |
2018 |
Cell Type
Human Neuroscience
Integrated Approaches
Interventional Tools
Monitor Neural Activity
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Spatial Correlations in Natural Scenes Modulate Response Reliability in Mouse Visual Cortex. |
Rikhye, Rajeev V; Sur, Mriganka; |
RFA-NS-14-009 |
|
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Spatial reconstruction of single-cell gene expression data. |
Satija, Rahul; Farrell, Jeffrey A; Gennert, David; Schier, Alexander F; Regev, Aviv; |
RFA-MH-14-215 |
2015 |
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Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. |
Nowakowski, Tomasz J; Bhaduri, Aparna; Pollen, Alex A; Alvarado, Beatriz; Mostajo-Radji, Mohammed A; Di Lullo, Elizabeth; Haeussler, Maximilian; Sandoval-Espinosa, Carmen; Liu, Siyuan John; Velmeshev, Dmitry; Ounadjela, Johain Ryad; Shuga, Joe; Wang, Xiaohui; Lim, Daniel A; West, Jay A; Leyrat, Anne A; Kent, W James; Kriegstein, Arnold R; |
RFA-MH-14-215 |
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Spontaneous and specific chemical cross-linking in live cells to capture and identify protein interactions. |
Yang, Bing; Tang, Shibing; Ma, Cheng; Li, Shang-Tong; Shao, Guang-Can; Dang, Bobo; DeGrado, William F; Dong, Meng-Qiu; Wang, Peng George; Ding, Sheng; Wang, Lei; |
RFA-MH-17-220 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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State-aware detection of sensory stimuli in the cortex of the awake mouse. |
Sederberg, Audrey J; Pala, Aurélie; Zheng, He J V; He, Biyu J; Stanley, Garrett B; |
RFA-NS-15-005 |
2019 |
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State-dependent geometry of population activity in rat auditory cortex. |
Kobak, Dmitry; Pardo-Vazquez, Jose L; Valente, Mafalda; Machens, Christian K; Renart, Alfonso; |
RFA-NS-15-005 |
2019 |
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Stochastic electrotransport selectively enhances the transport of highly electromobile molecules. |
Kim, Sung-Yon; Cho, Jae Hun; Murray, Evan; Bakh, Naveed; Choi, Heejin; Ohn, Kimberly; Ruelas, Luzdary; Hubbert, Austin; McCue, Meg; Vassallo, Sara L; Keller, Philipp J; Chung, Kwanghun; |
RFA-NS-14-009 |
2015 |
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Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. |
He, Miao; Tucciarone, Jason; Lee, SooHyun; Nigro, Maximiliano José; Kim, Yongsoo; Levine, Jesse Maurica; Kelly, Sean Michael; Krugikov, Illya; Wu, Priscilla; Chen, Yang; Gong, Ling; Hou, Yongjie; Osten, Pavel; Rudy, Bernardo; Huang, Z Josh; |
RFA-MH-14-215 |
|
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Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. |
He, Miao; Tucciarone, Jason; Lee, SooHyun; Nigro, Maximiliano José; Kim, Yongsoo; Levine, Jesse Maurica; Kelly, Sean Michael; Krugikov, Illya; Wu, Priscilla; Chen, Yang; Gong, Ling; Hou, Yongjie; Osten, Pavel; Rudy, Bernardo; Huang, Z Josh; |
RFA-MH-14-215 |
2016 |
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Structurally Distinct Cation Channelrhodopsins from Cryptophyte Algae. |
Govorunova, Elena G; Sineshchekov, Oleg A; Spudich, John L; |
RFA-MH-15-225 |
2016 |
Cell Type
Circuit Diagrams
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Interventional Tools
|
Structure and function of serotonin G protein-coupled receptors. |
McCorvy, John D; Roth, Bryan L; |
RFA-MH-14-216 |
2015 |
Cell Type
Circuit Diagrams
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Structure-inspired design of β-arrestin-biased ligands for aminergic GPCRs. |
McCorvy, John D; Butler, Kyle V; Kelly, Brendan; Rechsteiner, Katie; Karpiak, Joel; Betz, Robin M; Kormos, Bethany L; Shoichet, Brian K; Dror, Ron O; Jin, Jian; Roth, Bryan L; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Sublayer-Specific Coding Dynamics during Spatial Navigation and Learning in Hippocampal Area CA1. |
Danielson, Nathan B; Zaremba, Jeffrey D; Kaifosh, Patrick; Bowler, John; Ladow, Max; Losonczy, Attila; |
RFA-NS-14-009 |
2016 |
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Synapse-Selective Control of Cortical Maturation and Plasticity by Parvalbumin-Autonomous Action of SynCAM 1. |
Ribic, Adema; Crair, Michael C; Biederer, Thomas; |
RFA-NS-15-005 |
2019 |
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Synaptic Convergence Patterns onto Retinal Ganglion Cells Are Preserved despite Topographic Variation in Pre- and Postsynaptic Territories. |
Yu, Wan-Qing; El-Danaf, Rana N; Okawa, Haruhisa; Pacholec, Justin M; Matti, Ulf; Schwarz, Karin; Odermatt, Benjamin; Dunn, Felice A; Lagnado, Leon; Schmitz, Frank; Huberman, Andrew D; Wong, Rachel O L; |
RFA-NS-14-009 |
2018 |
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Systems biology in the central nervous system: a brief perspective on essential recent advancements. |
Dougherty, Joseph D; Yang, Chengran; Lake, Allison M; |
RFA-MH-15-225 |
2017 |
Cell Type
Circuit Diagrams
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Interventional Tools
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Task-dependent representations of stimulus and choice in mouse parietal cortex. |
Pho, Gerald N; Goard, Michael J; Woodson, Jonathan; Crawford, Benjamin; Sur, Mriganka; |
RFA-NS-14-009 |
2018 |
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The accessible chromatin landscape of the murine hippocampus at single-cell resolution. |
Sinnamon, John R; Torkenczy, Kristof A; Linhoff, Michael W; Vitak, Sarah A; Mulqueen, Ryan M; Pliner, Hannah A; Trapnell, Cole; Steemers, Frank J; Mandel, Gail; Adey, Andrew C; |
RFA-DA-18-018 |
2019 |
Cell Type
Circuit Diagrams
Interventional Tools
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The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas. |
Ecker, Joseph R; Geschwind, Daniel H; Kriegstein, Arnold R; Ngai, John; Osten, Pavel; Polioudakis, Damon; Regev, Aviv; Sestan, Nenad; Wickersham, Ian R; Zeng, Hongkui; |
RFA-MH-14-215 |
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The Cellular and Molecular Landscapes of the Developing Human Central Nervous System. |
Silbereis, John C; Pochareddy, Sirisha; Zhu, Ying; Li, Mingfeng; Sestan, Nenad; |
RFA-MH-14-215 |
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The Cellular and Synaptic Architecture of the Mechanosensory Dorsal Horn. |
Abraira, Victoria E; Kuehn, Emily D; Chirila, Anda M; Springel, Mark W; Toliver, Alexis A; Zimmerman, Amanda L; Orefice, Lauren L; Boyle, Kieran A; Bai, Ling; Song, Bryan J; Bashista, Karleena A; O'Neill, Thomas G; Zhuo, Justin; Tsan, Connie; Hoynoski, Jessica; Rutlin, Michael; Kus, Laura; Niederkofler, Vera; Watanabe, Masahiko; Dymecki, Susan M; Nelson, Sacha B; Heintz, Nathaniel; Hughes, David I; Ginty, David D; |
RFA-MH-14-215 |
2016 |
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The challenge of understanding the brain: where we stand in 2015. |
Lisman, John; |
RFA-NS-14-009 |
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The characteristic patterns of neuronal avalanches in mice under anesthesia and at rest: An investigation using constrained artificial neural networks. |
Fagerholm, Erik D; Dinov, Martin; Knöpfel, Thomas; Leech, Robert; |
RFA-MH-15-225 |
2018 |
Cell Type
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The Differences in Local Translatome across Distinct Neuron Types Is Mediated by Both Baseline Cellular Differences and Post-transcriptional Mechanisms. |
Ouwenga, Rebecca; Lake, Allison M; Aryal, Shivani; Lagunas, Tomas; Dougherty, Joseph D; |
RFA-MH-15-225 |
2019 |
Cell Type
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The effects of early autism intervention on parents and family adaptive functioning. |
Estes, Annette; Swain, Deanna M; MacDuffie, Katherine E; |
RFA-MH-18-510 |
2019 |
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The Expanding Family of Natural Anion Channelrhodopsins Reveals Large Variations in Kinetics, Conductance, and Spectral Sensitivity. |
Govorunova, Elena G; Sineshchekov, Oleg A; Rodarte, Elsa M; Janz, Roger; Morelle, Olivier; Melkonian, Michael; Wong, Gane K-S; Spudich, John L; |
RFA-MH-15-225 |
2017 |
Cell Type
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The first structure-activity relationship studies for designer receptors exclusively activated by designer drugs. |
Chen, Xin; Choo, Hyunah; Huang, Xi-Ping; Yang, Xiaobao; Stone, Orrin; Roth, Bryan L; Jin, Jian; |
RFA-MH-14-216 |
2015 |
Cell Type
Circuit Diagrams
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The functional diversity of retinal ganglion cells in the mouse. |
Baden, Tom; Berens, Philipp; Franke, Katrin; Román Rosón, Miroslav; Bethge, Matthias; Euler, Thomas; |
RFA-NS-14-009 |
2016 |
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The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus. |
Morgan, Josh Lyskowski; Berger, Daniel Raimund; Wetzel, Arthur Willis; Lichtman, Jeff William; |
RFA-NS-14-009 |
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The logic of single-cell projections from visual cortex. |
Han, Yunyun; Kebschull, Justus M; Campbell, Robert A A; Cowan, Devon; Imhof, Fabia; Zador, Anthony M; Mrsic-Flogel, Thomas D; |
RFA-MH-17-220 |
2018 |
Cell Type
Circuit Diagrams
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The mouse cortico-striatal projectome. |
Hintiryan, Houri; Foster, Nicholas N; Bowman, Ian; Bay, Maxwell; Song, Monica Y; Gou, Lin; Yamashita, Seita; Bienkowski, Michael S; Zingg, Brian; Zhu, Muye; Yang, X William; Shih, Jean C; Toga, Arthur W; Dong, Hong-Wei; |
RFA-MH-14-216 |
2016 |
Cell Type
Circuit Diagrams
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The NIH BRAIN Initiative: Integrating Neuroethics and Neuroscience. |
Ramos, Khara M; Grady, Christine; Greely, Henry T; Chiong, Winston; Eberwine, James; Farahany, Nita A; Johnson, L Syd M; Hyman, Bradley T; Hyman, Steven E; Rommelfanger, Karen S; Serrano, Elba E; Churchill, James D; Gordon, Joshua A; Koroshetz, Walter J; |
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The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex. |
Zerlaut, Yann; Zucca, Stefano; Panzeri, Stefano; Fellin, Tommaso; |
RFA-NS-14-009
RFA-NS-17-018 |
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The structure and timescales of heat perception in larval zebrafish. |
Haesemeyer, Martin; Robson, Drew N; Li, Jennifer M; Schier, Alexander F; Engert, Florian; |
RFA-NS-14-009 |
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Tomosaic: efficient acquisition and reconstruction of teravoxel tomography data using limited-size synchrotron X-ray beams. |
Vescovi, Rafael; Du, Ming; de Andrade, Vincent; Scullin, William; Gürsoy, Dogˇa; Jacobsen, Chris; |
RFA-MH-15-225 |
2018 |
Cell Type
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Toward a Common Coordinate Framework for the Human Body. |
Rood, Jennifer E; Stuart, Tim; Ghazanfar, Shila; Biancalani, Tommaso; Fisher, Eyal; Butler, Andrew; Hupalowska, Anna; Gaffney, Leslie; Mauck, William; Eraslan, Gökçen; Marioni, John C; Regev, Aviv; Satija, Rahul; |
RFA-MH-14-215 |
2019 |
Cell Type
Human Neuroscience
Integrated Approaches
Interventional Tools
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Tracing neuronal circuits in transgenic animals by transneuronal control of transcription (). |
Huang, Ting-Hao; Niesman, Peter; Arasu, Deepshika; Lee, Donghyung; De La Cruz, Aubrie L; Callejas, Antuca; Hong, Elizabeth J; Lois, Carlos; |
RFA-MH-15-225 |
2017 |
Cell Type
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Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type. |
Boldog, Eszter; Bakken, Trygve E; Hodge, Rebecca D; Novotny, Mark; Aevermann, Brian D; Baka, Judith; Bordé, Sándor; Close, Jennie L; Diez-Fuertes, Francisco; Ding, Song-Lin; Faragó, Nóra; Kocsis, Ágnes K; Kovács, Balázs; Maltzer, Zoe; McCorrison, Jamison M; Miller, Jeremy A; Molnár, Gábor; Oláh, Gáspár; Ozsvár, Attila; Rózsa, Márton; Shehata, Soraya I; Smith, Kimberly A; Sunkin, Susan M; Tran, Danny N; Venepally, Pratap; Wall, Abby; Puskás, László G; Barzó, Pál; Steemers, Frank J; Schork, Nicholas J; Scheuermann, Richard H; Lasken, Roger S; Lein, Ed S; Tamás, Gábor; |
RFA-MH-17-210 |
2017 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons. |
Hodge, Rebecca D; Miller, Jeremy A; Novotny, Mark; Kalmbach, Brian E; Ting, Jonathan T; Bakken, Trygve E; Aevermann, Brian D; Barkan, Eliza R; Berkowitz-Cerasano, Madeline L; Cobbs, Charles; Diez-Fuertes, Francisco; Ding, Song-Lin; McCorrison, Jamison; Schork, Nicholas J; Shehata, Soraya I; Smith, Kimberly A; Sunkin, Susan M; Tran, Danny N; Venepally, Pratap; Yanny, Anna Marie; Steemers, Frank J; Phillips, John W; Bernard, Amy; Koch, Christof; Lasken, Roger S; Scheuermann, Richard H; Lein, Ed S; |
RFA-MH-17-210 |
2020 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. |
Nowakowski, Tomasz J; Pollen, Alex A; Sandoval-Espinosa, Carmen; Kriegstein, Arnold R; |
RFA-MH-14-215 |
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Transforming Sensory Cues into Aversive Emotion via Septal-Habenular Pathway. |
Zhang, Guang-Wei; Shen, Li; Zhong, Wen; Xiong, Ying; Zhang, Li I; Tao, Huizhong W; |
RFA-MH-17-220 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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Transgenic Strategies for Sparse but Strong Expression of Genetically Encoded Voltage and Calcium Indicators. |
Song, Chenchen; Do, Quyen B; Antic, Srdjan D; Knöpfel, Thomas; |
RFA-MH-15-225 |
2017 |
Cell Type
Circuit Diagrams
Monitor Neural Activity
Interventional Tools
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Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma. |
Yen, Matthew; Qi, Zongtai; Chen, Xuhua; Cooper, John A; Mitra, Robi D; Onken, Michael D; |
RFA-MH-15-225
RFA-MH-17-220 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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Triple Fluorescence Anisotropy Reporter Imaging in Living Cells. |
Ross, Brian; Wong, Shenq Huey; Snell, Nicole E; Zhang, Jin; Rizzo, M A; |
RFA-MH-16-775 |
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Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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Two-Photon Bidirectional Control and Imaging of Neuronal Excitability with High Spatial Resolution In Vivo. |
Forli, Angelo; Vecchia, Dania; Binini, Noemi; Succol, Francesca; Bovetti, Serena; Moretti, Claudio; Nespoli, Francesco; Mahn, Mathias; Baker, Christopher A; Bolton, McLean M; Yizhar, Ofer; Fellin, Tommaso; |
RFA-NS-14-009 |
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Ultrastructural and optogenetic dissection of V1 corticotectal terminal synaptic properties. |
Masterson, S P; Zhou, N; Akers, B K; Dang, W; Bickford, M E; |
RFA-NS-17-015 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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Understanding the Fluorescence Change in Red Genetically Encoded Calcium Ion Indicators. |
Molina, Rosana S; Qian, Yong; Wu, Jiahui; Shen, Yi; Campbell, Robert E; Drobizhev, Mikhail; Hughes, Thomas E; |
RFA-NS-14-008
RFA-NS-15-004
RFA-NS-18-005 |
2019 |
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Universal Super-Resolution Multiplexing by DNA Exchange. |
Schueder, Florian; Strauss, Maximilian T; Hoerl, David; Schnitzbauer, Joerg; Schlichthaerle, Thomas; Strauss, Sebastian; Yin, Peng; Harz, Hartmann; Leonhardt, Heinrich; Jungmann, Ralf; |
RFA-MH-14-216 |
2017 |
Cell Type
Circuit Diagrams
Monitor Neural Activity
Interventional Tools
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Vibrissa Self-Motion and Touch Are Reliably Encoded along the Same Somatosensory Pathway from Brainstem through Thalamus. |
Moore, Jeffrey D; Mercer Lindsay, Nicole; Deschênes, Martin; Kleinfeld, David; |
RFA-NS-14-009 |
2015 |
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Visualization of Neuronal Structures in Wide-Field Microscopy Brain Images. |
Boorboor, Saeed; Jadhav, ; Ananth, Mala; Talmage, David; Role, ; Kaufman, Arie; |
RFA-MH-15-225 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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Visualizing and Interpreting Single-Cell Gene Expression Datasets with Similarity Weighted Nonnegative Embedding. |
Wu, Yan; Tamayo, Pablo; Zhang, Kun; |
RFA-MH-17-210 |
2018 |
Cell Type
Circuit Diagrams
Human Neuroscience
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Voltage imaging to understand connections and functions of neuronal circuits. |
Antic, Srdjan D; Empson, Ruth M; Knöpfel, Thomas; |
RFA-MH-15-225 |
2016 |
Cell Type
Circuit Diagrams
Monitor Neural Activity
Interventional Tools
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Whole-brain activity mapping onto a zebrafish brain atlas. |
Randlett, Owen; Wee, Caroline L; Naumann, Eva A; Nnaemeka, Onyeka; Schoppik, David; Fitzgerald, James E; Portugues, Ruben; Lacoste, Alix M B; Riegler, Clemens; Engert, Florian; Schier, Alexander F; |
RFA-NS-14-009 |
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Whole-Brain Mapping of Neuronal Activity in the Learned Helplessness Model of Depression. |
Kim, Yongsoo; Perova, Zinaida; Mirrione, Martine M; Pradhan, Kith; Henn, Fritz A; Shea, Stephen; Osten, Pavel; Li, Bo; |
RFA-MH-14-215 |
2016 |
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Whole-brain serial-section electron microscopy in larval zebrafish. |
Hildebrand, David Grant Colburn; Cicconet, Marcelo; Torres, Russel Miguel; Choi, Woohyuk; Quan, Tran Minh; Moon, Jungmin; Wetzel, Arthur Willis; Scott Champion, Andrew; Graham, Brett Jesse; Randlett, Owen; Plummer, George Scott; Portugues, Ruben; Bianco, Isaac Henry; Saalfeld, Stephan; Baden, Alexander David; Lillaney, Kunal; Burns, Randal; Vogelstein, Joshua Tzvi; Schier, Alexander Franz; Lee, Wei-Chung Allen; Jeong, Won-Ki; Lichtman, Jeff William; Engert, Florian; |
RFA-NS-14-009 |
2017 |
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Whole-organism lineage tracing by combinatorial and cumulative genome editing. |
McKenna, Aaron; Findlay, Gregory M; Gagnon, James A; Horwitz, Marshall S; Schier, Alexander F; Shendure, Jay; |
RFA-MH-14-215 |
2016 |
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Writ large: Genomic dissection of the effect of cellular environment on immune response. |
Yosef, Nir; Regev, Aviv; |
RFA-MH-14-215 |
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X-ray tomography of extended objects: a comparison of data acquisition approaches. |
Du, Ming; Vescovi, Rafael; Fezzaa, Kamel; Jacobsen, Chris; Gürsoy, Doğa; |
RFA-MH-15-225 |
2018 |
Cell Type
Circuit Diagrams
Interventional Tools
Monitor Neural Activity
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