The Human Neocortical Neurosolver (HNN) is a new user-friendly software package for circuit level interpretation of human EEG/MEG data. The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. HNN is a free open source package that was designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on the circuit origin of their data.
This Blueprint-funded Resource supports the design, creation, and characterization of Cre-recombinase-expressing ("Cre-Driver") mouse lines on the C57B1/6 background, which can be used to drive expression of reporter genes and conditional-ready alleles in the mouse nervous system. A MATLAB toolbox used in the paper that can be used to plug in other cell-type transcriptomes to infer their spatial distribution in the mouse brain.
clusterExperiment, an open source R package, provides functions for executing, evaluating and visualizing many different clusterings of experimental data, including data from single cell RNA-Seq studies.
Visualization software for interactive graphs of high-dimensional data.
BRAIN Project: NSF1533708
Open-source software for intracranial electrode localization and visualization.
BRAIN Project: MH111439
Performs causal mediation analysis under confounding or correlated errors.
BRAIN Project: EB022911
Monte Carlo simulator of cellular microphysiology.
BRAIN Project: NSF1707356
Graphical user interface (GUI) for automatic cell finding and point based registration from whole-slide images.
BRAIN Project: MH109062
Functions for estimating structural equation models using instrumental variables.
BRAIN Project: EB022904
Neurophysiological spike sorting software.
BRAIN Project: NS090537