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The Human Neocortical Neurosolver (HNN) is a new user-friendly software package for circuit level interpretation of human EEG/MEG data. The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. HNN is a free open source package that was designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on the circuit origin of their data.
clusterExperiment, an open source R package, provides functions for executing, evaluating and visualizing many different clusterings of experimental data, including data from single cell RNA-Seq studies.
Visualization software for interactive graphs of high-dimensional data.
BRAIN Project: NSF1533708
Open-source software for intracranial electrode localization and visualization.
BRAIN Project: MH111439
Performs causal mediation analysis under confounding or correlated errors.
BRAIN Project: EB022911
Monte Carlo simulator of cellular microphysiology.
BRAIN Project: NSF1707356
Graphical user interface (GUI) for automatic cell finding and point based registration from whole-slide images.
BRAIN Project: MH109062
Functions for estimating structural equation models using instrumental variables.
BRAIN Project: EB022904
Neurophysiological spike sorting software.
BRAIN Project: NS090537
P-value-based dependence detection, simulation, and multiple testing correction.
BRAIN Project: MH111416