Resources

Program
  • Understanding Circuits
  • Investigative Human Neuroscience
Resource Type
  • Research Tool
Priority Area
  • Theory & Data Analysis Tools
Summary

The Human Neocortical Neurosolver (HNN) is a new user-friendly software package for circuit level interpretation of human EEG/MEG data. The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. HNN is a free open source package that was designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on the circuit origin of their data.

Program
  • Cell Census Network (BICCN)
Resource Type
  • Research Tool
Priority Area
  • Cell Type
Summary

This Blueprint-funded Resource supports the design, creation, and characterization of Cre-recombinase-expressing ("Cre-Driver") mouse lines on the C57B1/6 background, which can be used to drive expression of reporter genes and conditional-ready alleles in the mouse nervous system. A MATLAB toolbox used in the paper that can be used to plug in other cell-type transcriptomes to infer their spatial distribution in the mouse brain.

Program
  • Cell Census Network (BICCN)
Resource Type
  • Research Tool
Priority Area
  • Cell Type
Summary

clusterExperiment, an open source R package, provides functions for executing, evaluating and visualizing many different clusterings of experimental data, including data from single cell RNA-Seq studies.

Program
  • Public-Private Partnerships
Resource Type
  • Grant Application Resource
Priority Area
  • Human Neuroscience
  • Interventional Tools
  • Monitor Neural Activity
Summary

This template document can be signed by academic researchers to allow confidential discussions of proprietary details with a given company regarding the capabilities of a device for the conduct of clinical research.

Resource Type
  • Research Tool
Summary

Visualization software for interactive graphs of high-dimensional data.
BRAIN Project: NSF1533708

Resource Type
  • Research Tool
Summary

Open-source software for intracranial electrode localization and visualization.

BRAIN Project: MH111439

Summary

Performs causal mediation analysis under confounding or correlated errors.

BRAIN Project: EB022911

Resource Type
  • Research Tool
Summary

Monte Carlo simulator of cellular microphysiology.

BRAIN Project: NSF1707356

Resource Type
  • Research Tool
Summary

Graphical user interface (GUI) for automatic cell finding and point based registration from whole-slide images.

BRAIN Project: MH109062

Summary

Functions for estimating structural equation models using instrumental variables.

BRAIN Project: EB022904