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Python Rayleigh-Sommerfeld integral for acoustics with optional CUDA graphics processing unit (GPU) implementation.
BRAIN Project: MH109105
Open-source software for laser scanning microscopy, electrophysiology, and laser scanning photostimulation.
BRAIN Project: MH110021, NS094246
Two-photon microscope control software with multi-area capabilities.
BRAIN Project: NS090475
Open-source software for interictal seizure onset zone classification using intracranial EEG data.
BRAIN Project: NS095495
MATLAB code for analyzing and modeling waves of seizure activity.
BRAIN Project: NSF1451384
Software for use with the compact Acousto-Optic Lens Microscope (AOLM) .
BRAIN Project: NS099689
Software tool to facilitate tractography‐based deep brain stimulation (DBS) electrode targeting.
Methods for reconstructing transcriptional regulatory networks.
BRAIN Project: MH114788
Integrative and Quantitative Approaches to Understanding Circuits
FastProject analyzes a gene expression matrix and produces a dynamic output report in which two-dimensional projections of the data can be explored. Annotated gene sets (referred to as 'signatures') are incorporated so that features in the projections can be understood in relation to the biological processes they might represent. FastProject provides a novel method of scoring each cell against a gene signature so as to minimize the effect of missed transcripts as well as a method to rank signature-projection pairings so that meaningful associations can be quickly identified.