Resources

Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Theory & Data Analysis Tools
Summary

Open-source neural simulation toolbox.

BRAIN Project: NSF1734980

Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Human Neuroscience
  • Interventional Tools
  • Monitor Neural Activity
Summary

Python Rayleigh-Sommerfeld integral for acoustics with optional CUDA graphics processing unit (GPU) implementation.

BRAIN Project: MH109105

Program
  • Technology Development
Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Interventional Tools
  • Monitor Neural Activity
Summary

Two-photon microscope control software with multi-area capabilities.

BRAIN Project: NS090475

Program
  • Public-Private Partnerships
Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Human Neuroscience
  • Interventional Tools
  • Monitor Neural Activity
Summary

Open-source software for interictal seizure onset zone classification using intracranial EEG data.

BRAIN Project: NS095495

Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Theory & Data Analysis Tools
Summary

MATLAB code for analyzing and modeling waves of seizure activity.

BRAIN Project: NSF1451384

Program
  • Technology Development
Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Interventional Tools
  • Monitor Neural Activity
Summary

Software for use with the compact Acousto-Optic Lens Microscope (AOLM) .

BRAIN Project: NS099689

Resource Type
  • Research Tool
  • Research tool: Software
Summary

Software tool to facilitate tractography‐based deep brain stimulation (DBS) electrode targeting.

Program
  • Informatics
Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Cell Type
  • Circuit Diagrams
  • Human Neuroscience
  • Integrated Approaches
  • Interventional Tools
  • Monitor Neural Activity
  • Theory & Data Analysis Tools
Summary

Methods for reconstructing transcriptional regulatory networks.
BRAIN Project: MH114788

Program
  • Investigative Human Neuroscience
  • Understanding Circuits
Resource Type
  • Research Tool
  • Research tool: Software
Priority Area
  • Theory & Data Analysis Tools
Summary

The Human Neocortical Neurosolver (HNN) is a new user-friendly software package for circuit level interpretation of human EEG/MEG data. The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. HNN is a free open source package that was designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on the circuit origin of their data.

Program
  • Neuroethics
Resource Type
  • Overview
Priority Area
  • Cell Type
  • Circuit Diagrams
  • Human Neuroscience
  • Integrated Approaches
  • Interventional Tools
  • Monitor Neural Activity
  • Theory & Data Analysis Tools
Summary

Image of brain colored with blue highlights