Cooperative Agreements

A Tool for Synapse-level Circuit Analysis of Human Cerebral Cortex Specimens.

Project Summary/Abstract The goal of this work is to facilitate synaptic level analysis of neurons and their interconnecting microcircuits in neurosurgical cerebral cortex biopsies from human patients. These full-thickness human cerebral cortex biopsies will be provided by neurosurgical colleagues from patients undergoing resective surgery or surgical implantation of leads for deep brain stimulation (DBS).

Functional and cell-type specific axonal pathways in the primate brain

Project Summary/Abstract Over the past decade, there have been transformative advances in three areas of mammalian neuroscience. First, our ability to record from large populations of neurons has dramatically increased with the advent of new electrode technologies and improved multiphoton imaging. Second, the study of brain connections in their entirety, connectomics, has come into its own as a field.

A Molecular and Cellular Atlas of the Marmoset Brain

PROJECT SUMMARY/ABSTRACT The complexity of the mammalian brain is unparalleled by any other organ, and understanding its cellular composition is essential to understand how it gives rise to cognition and behavior. It is clear that brain contains many more cell types than have been described to date. Many cell types can now be distinguished by their patterns of gene expression, and knowledge of these patterns can provide genetic access to specific populations of neurons.

Anatomy

ANATOMY RESEARCH SEGMENT SUMMARY   The  overarching  goal  of  neuroanatomy  is  to  establish  a  structural  framework  to  integrate  multiscale  and  multi-­modal information and to provide a road map that guides the exploration of neural dynamics and brain  function.  “Anatomic”  neuron  types  can  be  described  by  their  location,  morphology,  a

Collaboratory for atlasing cell type anatomy in the female and male mouse brain

Even though scientists have been captivated by the diversity of brain cells for well over a century, since the initial anatomical descriptions by Santiago Ramón y Cajal, it is only recently that the developments in new technologies allowed us to truly appreciate the astonishing complexity of cell types in the mammalian brain. Yet, even today, our knowledge of cell type anatomy and function is largely limited to a few brain areas, such as the sensory cortex or the hippocampus.

A Cellular Resolution Census of the Developing Human Brain

Project Summary/Abstract We aim to create a spatiotemporal single cell resolution map of the developing human neocortex in order to establish how many distinct cell types are present and to unravel their complex developmental history. We will build our analysis on a multimodal classification of cells types based on transcriptomic signatures but complemented where possible by physiological and epigenetic features.

Anatomical characterization of neuronal cell types of the mouse brain

PROJECT SUMMARY AND ABSTRACT A comprehensive understanding neuronal cell type diversity is an essential guide to selective manipulation and illuminating cell type specific functional contributions toward health and disease. Accordingly, the Brain Initiative Cell Census Network (BICCN) is unifying the efforts of laboratories with unique expertise in anatomy, genetics, electrophysiology, and function to classify neurons and create a common 3D atlas with integrated cell type data.

An anatomical cell type atlas of gene expression, morphology and connectivity

Project Summary (Research Segment 2) The brain circuit is an intricately interconnected network of numerous cell types. To understand the principles of information processing in the brain circuit, it is essential to determine a catalog of cell types, how they are distributed throughout the brain, and how they are connected to each other.

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